RNA id: XM_039822636.1


Basic Information

Item Value
RNA id XM_039822636.1
length 637
RNA type mRNA
GC content 0.43
exon number 5
gene id mrpl52
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18169214 ~ 18173027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagaaagaagaagaagaagaagaagagtgcaTCTTTAGCGCCACCTGGTGCTCAATACAGAAGTGTGCAGACAACATGGCGGCCCCCGTGAGGACTTTGTGCTGTTCAGTGTTGAGGCACTCCAGCAGGCAGTTCAGCACAACATGTGGAGTACAGGCTGGAGAGAAATGGAGGAAAGAACATGGACTTTCCCGAAGCGGCACAGAATATGGCCCTCTGACAGATCTGCCTGATTGGTCCTTTGCCGATGGGAGACTGGCACCTCCAATGAAGGGACAGCTAAGAAGAAAGCAAGAGAGGGAAGTTTTAGCAAGACGTATCGTGATGCTGAACTCGGAGGTGGACAGAGGGATGGAGGTGTGGAGCGAAAAACAGGAAGAAGCCAAAAGAATGGAGGAGCACAAAAAGTCTCTTTTACTCAAACCTAAAGGGAAGTTGTTAATGAAGAAAAAATCTAAAAGTTAGAATTATCATTGTAATCATGTTGCCATGTCCTTATTCTGAACAATATGTTGATGTCAGTCTATTGAATATATTTATGAGGACTTGTGGGTTTtcccctgctttattgtttgtgtttttcactATTAGTGGATTTCTGCAATAAATGTTATGATTTATACTTTAAATATGAA

Function

GO: NA

KEGG:

id description
K17433 MRPL52; large subunit ribosomal protein L52

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194348 lncRNA downstream 108661 17973899 ~ 18060553 (-) False LOC120573700
TU194367 lncRNA downstream 149908 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 166743 17992145 ~ 18002471 (-) True LOC120572704
TU194329 lncRNA downstream 279562 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 315400 17852399 ~ 17853814 (-) False smim20
XR_005641738.1 lncRNA upstream 75416 18248443 ~ 18250057 (-) True LOC120573605
TU194639 lncRNA upstream 363120 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 527182 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 655437 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 762948 18935975 ~ 18936227 (-) True G144346
XM_039823398.1 mRNA downstream 25544 18135419 ~ 18143670 (-) True lrp10
XM_039823614.1 mRNA downstream 35716 18126764 ~ 18133498 (-) False LOC120573701
XM_039823613.1 mRNA downstream 35716 18126764 ~ 18133498 (-) True LOC120573701
XM_039823615.1 mRNA downstream 35726 18126764 ~ 18133488 (-) False LOC120573701
XM_039821852.1 mRNA downstream 73260 18084380 ~ 18095954 (-) True LOC120572515
XM_039822639.1 mRNA upstream 12870 18185897 ~ 18218817 (-) False acin1b
XM_039822640.1 mRNA upstream 12870 18185897 ~ 18218817 (-) False acin1b
XM_039822638.1 mRNA upstream 12870 18185897 ~ 18218817 (-) True acin1b
XM_039822641.1 mRNA upstream 45917 18218944 ~ 18229007 (-) True efs
XM_039822644.1 mRNA upstream 48815 18221842 ~ 18229007 (-) False efs
TU194399 other downstream 45524 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 108059 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 348137 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 416225 17744954 ~ 17752989 (-) False tbc1d19
TU194122 other downstream 919660 17248088 ~ 17249554 (-) False LOC120572513
TU194667 other upstream 422075 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 521672 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 523069 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 525235 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 525831 18698858 ~ 18698931 (-) True trnan-guu_14

Expression Profile