RNA id: TU194667


Basic Information

Item Value
RNA id TU194667
length 2000
RNA type TUCP
GC content 0.50
exon number 2
gene id G144258
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18595102 ~ 18597231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCATTCTATCTTTTTTATTCAATGCattctttaaataataacaatcTGTTCATCACTTAAGCAGGTCTTTGACCATTCATTCCCAAAAGTAATAATAACATCAATAGTTTCCTTATTAACAACAGTAATACAATTGAAGTGCTTAACCAGGCAACCAGAAGAGCCAATAGAGATcatacagcaacaaaaaaaaaggacaaaagaacGGTGTACAGTACACTCttacccttacacacacacacacacacacacacacacacacacacactcttacccttacacacacacacacacactctcttagccttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaccatctTGATAATTAAAGACATTAAAGCAAAACTGCCTGTTCATTTAGAAACAGCACCAAACATCAAAAATCATTGCAGCAGTAATAATACTAAGCTTAACATTCCTCATTTgagcatcatcatcaatatcatcagtCATAAGAATCTTTACATCTGCACATTTACAGGATCCAACCAAATGGACCCCAAACTGGAGTGTTTCCATGCTGAACAGTTCTTTGATGTAGATCAATTAGTCAGATCTACATGTCGCCCTCAACCCAGCAGAGGGCGACATGCAACAAGCCACCAGCACCTCGTCCTACAGCTTTCACGGAGAAAGTCAGTGTGTTTTAGTAAACTGATCTGCACCAAAAACTATGTCTGGAAAATAAGCAGGGTATTGCTGTGTTAAAATCAGTGCAAATTCTTCGAAGACCCACTTAATTTCCAGGGATAAGCTTTTGGTTTCAACAAATCTTCTCGGTGTGCATTTGGTGTTGAGAAGTTTATGTCTGTGCCCCCGGCAAGGCCAGTCCCGGCTCCAGGCTGGTGGTGGTAGTTGTGGGGGTAGGGGAGGGCGGCAGTCCCTTGGGTCCCGGACAAAGCAGCCCACGTGAAGCTGCATGGTCCCCGTTCAAGTTCTTGTAGGGGTTTCTGCGCGGTGGAGCTCGGGGACACATTGAGGGAAAGCGAAGTCCAGCGAGGCAGCAGCCGGGACAGGAGATGACCTCCTCCTGGTCCAGAGAGTGTCCGCTGCCGGAGCCGAATGGGGATGACCCAGCGGGGTCGCTGGGAGGGAAGTGGTAGCcgttgttgtttgttgtggtGGGAGCACTGGTGGTGGCACTCCATCCCAAGGGTCGACCCACGACCACGTTGTTATTGTCCAAATGAGAGAGGGGAGGCAGGCACGGGGGCCCGTTGGAGATGGCCGACCCCCAGCCTTTTGAGAAGGGAGGAGTGGAGGGTTGGATGGGAGTTGAGGAGTGGGACGGAGGAAAGGAGAGTTTGGAATAAGGAGATGAAGTGCTGTCTTGTGTGTCTGGGGAGCTGGTACAATCCATGGGCTCCTCCTCCTCGTAGTCCTCCTCTTCCCCCTCTTCCTCTTGGTCCAGCGACAGGGGTTCAATGGAAAGAGGAAGGCCTGAATCAGTTCCGCTCCGTTCCCTGAtctccttctcttctcctaACAGTCTCTCTTCTTCACTCACTCGGTTTGTCTCTCCGTTTACAGTGTCTACCTCAGACGTGGACTCCTCCTCGGTAAGGACAGTATTCGGCGGTGATGTGAGATGTGGAGGAGGCGTACAAGGCAGTGAGTGGCAGCGTCTGTGCCTCCTCGGTAGCTCACCGCTGTCGGTCTCGGACGCAGAGGGGTCGTCGCAGTCAGGTGGAGGAGGCAGGGTGAAGGTAAGGGAGATGACAGACTTGCTGGGAGTGTCAAACAGCTTGATCTTGCCTCCCTTGAGGTCCTCCCTCTGAGAGAAGGGGTTGACCCGAGCAGGAATTGCCATAGTAACAGAGGGGGACATTTCTGGGGGGTGGAGCATGTCGGATTTGCTGCGGGAGAGTCGAGGATCTGACAGGAGGCAGAGGGATCGTCTTCGTAGAGGACCAATAACTGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194639 lncRNA downstream 55521 18536147 ~ 18539581 (-) False c14h4orf48
XR_005641738.1 lncRNA downstream 345045 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 422081 18169293 ~ 18173021 (-) False mrpl52
TU194348 lncRNA downstream 534549 17973899 ~ 18060553 (-) False LOC120573700
TU194367 lncRNA downstream 575796 18016249 ~ 18019306 (-) True G144037
TU194691 lncRNA upstream 102978 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 231233 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 338744 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 365635 18962866 ~ 19056782 (-) False clcn3
XR_005641466.1 lncRNA upstream 396238 18993469 ~ 19001392 (-) False LOC120572676
XM_039821643.1 mRNA downstream 34049 18551540 ~ 18561053 (-) True faah2b
XM_039821355.1 mRNA downstream 55479 18536143 ~ 18539623 (-) True c14h4orf48
XM_039822760.1 mRNA downstream 72361 18498740 ~ 18522741 (-) False nat8l
XM_039822759.1 mRNA downstream 72366 18498740 ~ 18522736 (-) True nat8l
XM_039822758.1 mRNA downstream 157506 18431393 ~ 18437596 (-) True LOC120573208
XM_039823285.1 mRNA upstream 15442 18612673 ~ 18626072 (-) True pik3c3
XM_039823286.1 mRNA upstream 15442 18612673 ~ 18626071 (-) False pik3c3
XM_039823402.1 mRNA upstream 34847 18632078 ~ 18637992 (-) True rgp1
XM_039823403.1 mRNA upstream 34847 18632078 ~ 18637619 (-) False rgp1
XM_039821567.1 mRNA upstream 67960 18665191 ~ 18701577 (-) False LOC120572304
TU194399 other downstream 471412 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 533947 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 774025 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 842113 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 1345548 17247951 ~ 17249554 (-) False LOC120572513
unassigned_transcript_702 other upstream 97468 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 98865 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 101031 18698262 ~ 18698335 (-) True trnan-guu_13
unassigned_transcript_705 other upstream 101627 18698858 ~ 18698931 (-) True trnan-guu_14
unassigned_transcript_706 other upstream 102194 18699425 ~ 18699497 (-) True trnak-cuu_4

Expression Profile