RNA id: TU194853


Basic Information

Item Value
RNA id TU194853
length 1517
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id clcn3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18962866 ~ 19056782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTTgaaggcacacacacaagtgaAGTACAAAATCCCAAACGCACACTTTTGCATTGCAGACACCTCAAACATGCATGCTCTCTCTTCACATACACATAACCTGTAAAGATTTCCCCCTTTGCACTCTTCATGTGCCTCACCCTTGTCCTGTCTCCGCCGAGGTCGTGGTAGCCATCGCCtgacgGTTAGATGGGTATTGTATTTTAAGAACAAAATTGTTCCCTTTCAGATGGAAGTgagtgtgttttcttttctcagccagctttagctgtgtgtgtgtgtctcacaggTCGAGTGTGTAcgtaaaggaaaacaaaaataaagtgttGAATTCTTCTGTACTCTGTTACAGGacacaaaatatataaacatttcctttttcttctcaaaCTATTACTCTTGCCACTTTTAGACTATTGATCTTGCTATAATCAATTAGGTTTTTACGACAAAACAAAACTGGAAATCTGCACTGTTTTAAGTGATCGGTTAGTGTGATTGGAGAAGGACGGTGTTAATGCTACATGGTGacttcttgttttctttttctgaaatCTGTCCACATCTTTGGGTGATAAcattgtatattttcaaacaagAAATTTTTTTTCGTTATATTTTATTCCCATTAGTTTATCAGAGGAAAGGTACTGTTAAACACTCCGTACATCTTTGGACGCATGAACCTAATTGTCCACctggaaaagacaaaaaaaaaaaaacgtaaagaGATTTGCACATTGTCAACGTCACACTTTGATTAAATAGTATTTCCAAAAGTTGATAGTGTGTGCCAGGTGGCTGGAAGTTGAGGCATCTGATCAGTTGAGATGTTGATATTTTGACACTTTAACATGATTTAAAACGACAAAATACAAGAAATCAAAACCAGTACAAAAGGTCACTAAACAACTAACAATCGTTtgatttttgttattattacccAAGCCcaagtttgtttaaataacccAAGTTAATGTCtctaaattgcttgttttgtccaaccaccAGTCCAAAACACAAACCTATTGGAATcataatgatataaaacagagtaAAGCTAtacatcctcacattttagaatctgggacccccccccccctctcttaaTTCTCATGTCTTATCCTGTCAATCATCTCACGACCCACGTGAAGAACCACTGCCATTGGCTACAAACGCATACAGCTACATCTGCACACTGCCTTTAGTGATAGCAGGTTGTGCTCAATCTCGCTTGTCCAGTTTGCTACGTCCGCCTGGCAAATGTTTCCCGGCTCTCCACACCTGTATTTTATCCCTGAACCCAAAAGCAACACCTGCTACTCCCACCTGGCATTCCCTTTTTGTCCTTAGAACATGTAACGTGTTGTGATCCTTTTGAAGTGCAAACAATAAAGGGAAATGAAGAGATGGAGGGACGGTGAAGCGGGGACAAACGGTAGCACTTTACTTGTAGAGtggcagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194868 lncRNA downstream 10676 18994751 ~ 19002231 (-) True LOC120572676
XR_005641466.1 lncRNA downstream 11515 18993469 ~ 19001392 (-) False LOC120572676
TU194784 lncRNA downstream 76680 18935975 ~ 18936227 (-) True G144346
TU194729 lncRNA downstream 182592 18828464 ~ 18830315 (-) True G144303
TU194691 lncRNA downstream 312352 18700209 ~ 18700555 (-) True G144275
TU194877 lncRNA upstream 83879 19098582 ~ 19098840 (-) True G144422
TU194878 lncRNA upstream 84191 19098894 ~ 19099197 (-) True G144423
TU194879 lncRNA upstream 85277 19099980 ~ 19100230 (-) True G144424
TU194880 lncRNA upstream 85725 19100428 ~ 19100837 (-) True G144425
TU194954 lncRNA upstream 219618 19234321 ~ 19235524 (-) True G144476
XM_039822020.1 mRNA downstream 21127 18984632 ~ 18991780 (-) True ino80b
XM_039822019.1 mRNA downstream 23064 18984632 ~ 18989843 (-) False ino80b
XM_039822021.1 mRNA downstream 23187 18984632 ~ 18989720 (-) False ino80b
XM_039822023.1 mRNA downstream 23288 18984632 ~ 18989619 (-) False ino80b
XM_039822018.1 mRNA downstream 23288 18984632 ~ 18989619 (-) False ino80b
XM_039822026.1 mRNA upstream 89 19014792 ~ 19053095 (-) False clcn3
XM_039822024.1 mRNA upstream 89 19014792 ~ 19053093 (-) False clcn3
XM_039822029.1 mRNA upstream 89 19014792 ~ 19040742 (-) False clcn3
XM_039822025.1 mRNA upstream 89 19014792 ~ 19037517 (-) True clcn3
XM_039822028.1 mRNA upstream 96 19014799 ~ 19053093 (-) False clcn3
unassigned_transcript_711 other downstream 41444 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_710 other downstream 45894 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_709 other downstream 47470 18965366 ~ 18965437 (-) True trnad-guc_5
unassigned_transcript_708 other downstream 275755 18737082 ~ 18737152 (-) True trnag-gcc_1
unassigned_transcript_707 other downstream 313050 18699785 ~ 18699857 (-) True trnak-cuu_5
unassigned_transcript_712 other upstream 50457 19065160 ~ 19065241 (-) True trnas-gcu_6
TU194942 other upstream 335807 19350510 ~ 19353292 (-) False LOC120572670
XR_005641381.1 other upstream 642380 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU195325 other upstream 761977 19776680 ~ 19797530 (-) True G144730
XR_005641682.1 other upstream 1812580 20827283 ~ 20863889 (-) False LOC120573300

Expression Profile