RNA id: XM_039822027.1


Basic Information

Item Value
RNA id XM_039822027.1
length 2790
RNA type mRNA
GC content 0.57
exon number 16
gene id clcn3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18962866 ~ 19056782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTGACACAGGAATGGGactgaaaaaggaaaacaccATCATGATGAGGAGAATGTCAAATCCACTCGTGTAGGAAACAAAAATCCTCGTTTCAACTCCAGGAAAAAAGGATGAATGTTCGTGTCCGAGCTGAAATTGAGGCATCAGGAAGGGCACCGGCGTGTTGCTAAATGGAGTCGGAGCAGCTGTATCACAGAGGCTACTGCAggaacagctacaacagcatCGCCAGCGCCAGCAGCGACGAGGAGCTGCTGGATGGAGCCGGCGTTATCATGGACTTCCACACCACAGAGGACGACAACCTGCTGGATGGGGACGCTACCTCCCCAGGGTCTAACTACGTCATGTCTAACGGGGGCGGGGCACCCAGCAGCACCACCCACCTGTTGGACTTCCTAGAGGAGCCCATCCCTGGTGTGGGGACCTACGACGACTTCCACACCATCGACTGGGTCCGTGAGAAGTGCAAGGACCGCGAGAGGCACCGGAAGattAACAGTAAGAAAAAGGAGTCAGCATGGGAGTTCACAAAGAGCCTGTACGATGCCTGGTCTGGGTGGCTGGTGGTGACGCTCACTGGCTTGGCCTCAGGTGCTTTGGCTGGCCTGATTGACATTGttgctgattggatgaacgacCTGAAGGAGGGCGTGTGTCTGAGCGCCATGTGGTTCAACCACGAGCAGTGCTGCTGGACTTCCAATGAGACCACCTTCGCTGAGCGGGACAAGTGTCCTCAGTGGAAGAGCTGGGCTGAGCTAATACTGGGGCAGGCCGAGGGGCCCGGCTCGTACATCATGAACTACTTCATGTACATCTACTGGGCTCTGTCCTTCGCCTTCctggctgtctgtctggtcAAGGTGTTcgctccctacgcctgcggctCTGGGATCCCTGAGATCAAGACCATCCTGAGTGGGTTTATCATCCGGGGATACCTGGGCAAGTGGACCCTGATGATCAAGACCATCACTCTGGTGTTGGCTGTGGCGTCTGGCCTCAGCCTGGGGAAGGAGGGTCCCCTGGTCCACGTGGCCTGCTGCTGTGGGAACATCTTCTCCTACCTCTTCCCCAAGTACAGCAAGAATGAGGCCAAGAAACGAGAGGTTCTCTCTGCTGCGTCGGCGGCTGGGGTGTCTGTTGCTTTTGGTGCCCCAATTGGAGGAGTGCTCTTCAGCTTGGAGGAGGTGAGCTACTACTTCCCTCTCAAGACGTTGTGGCGCTCCTTCTTTGCCGCCCTGGTGGCAGCCTTCGTCCTGCGCTCCATCAACCCGTTTGGTAACAGCCGTCTGGTACTGTTCTACGTGGAGTACCACACGCCGTGGTACCTGTTTGAGCTCATCCCTTTCATCCTTCTGGGAGTTTTCGGAGGCCTCTGGGGCGCCTTCTTCATCCGGGCCAACATCGCTTGGTGTCGGCGGCGCAAGTCGACACGCTTCGGCAAGTACCCAGTGTTGGAGGTAATCTTTGTGGCGGCCATCACAGCTGTGGTTGCTTTCCCAAACCCATATACTCGTCAGAACACCAGCGAGCTGATAAAGGAGCTGTTTACCGACTGTGGGCCGCTGGAGTCTTCGCAGCTCTGCCAGTACCGCAGCCAGATGAATGGCAGTAAGGCATTCACCGACAACCCCAACCGGCCGGCAGGGCCCGGCGTCTACGCCGCCATGTGGCAGCTCTGCCTGGCGCTCATCTTCAAAATCATCATGACTATATTCACCTTTGGACTCAAGGTACCGTCAGGCTTGTTCATCCCCAGCATGGCTATCGGGGCGATCGCAGGGCGAATCGTTGGCATCGCCGTGGAGCAGCTGGCCTATTATCACCACGACTGGTTCTTGTTCAAAGAGTGGTGTGAGGTGGGAGCAGACTGCATCACTCCAGGGCTCTACGCCATGGTGGGGGCCGCGGCATGTCTGGGTGGTGTAACCCGTATGACTGTCTCCCTGGTCGTCATCGTCTTCGAGCTGACCGGTGGGTTGGAGTACATCGTCCCCCTCATGGCTGCCGTCATGACCAGCAAATGGGTGGGCGATGCGTTTGGCCGTGAGGGAATCTACGAGGCCCACATCCGTCTGAACGGTTACCCCTTCCTGGACGCCAAGGAGGaattcacacacatcacactggCCAGAGAGGTGATGAGGCCTCGACGCAGCGACCCGCCCTTAGCGGTGCTGACGCAGGATGACCTGAcggtggaggagctgcagagcACTATCAATGAAACCAGTTATAATGGTTTCCCTGTGATAGTGTCCAAGGAGTCCCAGAGGCTGGTGGGCTTCGCTCTGCGCAGGGACATCACTATCGCTATCGAAAATGCTCGTCGCAAGCAGGAGGGCATCATGTTGAACTCCAGGGTGTACTTCACCCAGCACGCACCCACCCTGCCGGCCGACAGCCCTCGGCCCCTCAAACTGCGCTCCATCCTGGACATGAGCCCCTTCACCGTCACCGACCACACCCCCATGGAGATCGTGGTGGACATCTTCAGAAAGATGGGGCTGCGCCAGTGCCTGGTCACTCACAACGGGAATGTGTTGGGCATCATCACAAAGAAGAATATATTAGAGCATCTGGAGGAGCTCAAGCAGCATACGGAGCCCTTGATTGACGACATCTGAGCCATCGCCTTAACAACCACTTGGCGGCTTCTTGGTAttatcacaaaaaaagatatccTTCGTCACATGGCTCAAATGGCAAACCTAGATCCCGAGTCCATCATGTTCAACTGATCCGCTCCTTCCAGGACGGCCGGGGGGGAGGGGCAGACGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194853 lncRNA downstream 186 19012907 ~ 19014703 (-) False clcn3
TU194868 lncRNA downstream 12658 18994751 ~ 19002231 (-) True LOC120572676
XR_005641466.1 lncRNA downstream 13497 18993469 ~ 19001392 (-) False LOC120572676
TU194784 lncRNA downstream 78662 18935975 ~ 18936227 (-) True G144346
TU194729 lncRNA downstream 184574 18828464 ~ 18830315 (-) True G144303
TU194877 lncRNA upstream 45489 19098582 ~ 19098840 (-) True G144422
TU194878 lncRNA upstream 45801 19098894 ~ 19099197 (-) True G144423
TU194879 lncRNA upstream 46887 19099980 ~ 19100230 (-) True G144424
TU194880 lncRNA upstream 47335 19100428 ~ 19100837 (-) True G144425
TU194954 lncRNA upstream 181228 19234321 ~ 19235524 (-) True G144476
XM_039822020.1 mRNA downstream 23109 18984632 ~ 18991780 (-) True ino80b
XM_039822019.1 mRNA downstream 25046 18984632 ~ 18989843 (-) False ino80b
XM_039822021.1 mRNA downstream 25169 18984632 ~ 18989720 (-) False ino80b
XM_039822023.1 mRNA downstream 25270 18984632 ~ 18989619 (-) False ino80b
XM_039822018.1 mRNA downstream 25270 18984632 ~ 18989619 (-) False ino80b
XM_039822033.1 mRNA upstream 1683 19054776 ~ 19057674 (-) True nit1
XM_039822722.1 mRNA upstream 50922 19104015 ~ 19134265 (-) True si:ch211-168d1.3
XM_039822721.1 mRNA upstream 50922 19104015 ~ 19129420 (-) False si:ch211-168d1.3
XM_039822723.1 mRNA upstream 50922 19104015 ~ 19116556 (-) False si:ch211-168d1.3
XM_039823233.1 mRNA upstream 101939 19155032 ~ 19185791 (-) True gal3st3
unassigned_transcript_711 other downstream 43426 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_710 other downstream 47876 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_709 other downstream 49452 18965366 ~ 18965437 (-) True trnad-guc_5
unassigned_transcript_708 other downstream 277737 18737082 ~ 18737152 (-) True trnag-gcc_1
unassigned_transcript_707 other downstream 315032 18699785 ~ 18699857 (-) True trnak-cuu_5
unassigned_transcript_712 other upstream 12067 19065160 ~ 19065241 (-) True trnas-gcu_6
TU194942 other upstream 297417 19350510 ~ 19353292 (-) False LOC120572670
XR_005641381.1 other upstream 603990 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU195325 other upstream 723587 19776680 ~ 19797530 (-) True G144730
XR_005641682.1 other upstream 1774190 20827283 ~ 20863889 (-) False LOC120573300

Expression Profile