RNA id: XM_039822006.1


Basic Information

Item Value
RNA id XM_039822006.1
length 7992
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC120572670
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19282933 ~ 19353306 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcgtgctTCACGTCCTCTAACTGAAGAGGCGTAGCTCTTTGCTCTCTGCTCATTGTGCGACTACGGCGAGAGAAATTTCCGCTTCCTGCGCCGATAAACACCCCCCAACCAAAACCAAGTTGGGGTAGGGAGAAGACACACAGACGTACGCGGGGATTTGCCGCCTGACTACGGGTTTAAACCCCCCCCTGACGACTGCAATGGTTTCACTATCAGGCGGCGAATAGCACAAAACGTTATCAACTTTACGTTCACACTGTACGTTACACGGGAGCGTTTCGCGCATTTGCACTGCAGGAGCctctgaaaaaaaataaggctAAGGAAGGAGGAGGACCACAGaaaaaaggacaacacacacacagagaagccaGGCTACTACGGGTTTTCCTCCTCGCAGCTCCGACTGAAAGCCCGTTTTCAGCCTCCAGGATGTCGGAGCGAGGAGGGCTCCCGCGGACTGGGGGCGTCCCTTCGCCGCACATGCAGCCCTCCAAGCCGGTCTGCATCACCTCCAACCGGCCGGTCCACATGAACCTGTACGCTACCTGGGAGGTGGACCGCTCCTCACCCAGCTGTGTGCCCAGGCTGTTCAACCTGACTCTGAAAAAGCTGATCATGCTAAAGGAGCTGGATAAAGACCTCACCTCCGTGGTCATCGCCGTCAAACTGCAGGGTTCAAAGCGGATCCTGCGGTCCAACGAGATCCTGCTGTCCTCAGCGGGACTGACAGAGACCGACCTGCAGCTCACCTTTTCCCTGCAGTACCCACACTTCCTAAAGAGGGACGCCAACAAGCTTCAGATCATGCTGCAGCGACGGAAGCGATACAAGAACCGGACCATCCTGGGCTACAAGACCCTGGCCCTGGGACTCATCAACATGGCCGAGGTGATGCAGCACCCCAGTGAGGGGGCCCAGGTCCTGGGGCTCCACAGCCAGCTGAAGGACGCCTCGGTGCCCGTCGCTGAGATCAGAGTCTACTCACTATCCAGCCAGCCCATCGACCATGAGGGACCCAAAGCAAAGATGTCTGATCGCTCCCCAGACATCGACAACTACTccgaagaggaggaagagagctACTCGTCAGAACAGGAGGGCAGCGACGACCCCATTCATGGACAGTACCTATATGACGAAGAAGACGAGGTGAGAAAAAAGAAGCCGAGGCGCAAGCTCCCTTCCAATGCCGCCATCACCAGACAACCCAACATCAAGCAGAAGTTTGTCGCCTTGCTGAAAAGGTTTAAAGTCACCGATGAGGTCGGTTTTGGCCTGGAGCATGTGTCGAGGGAGCAGATccaggaggtggaggaggaccTGGACGAGCTCTACGACAGTCTGGAGATGTACAACCCCAGCGACAGCGGGCCGGAGATGGAGGAGACCGACAGCATCCTCAGCACACCCAAACCTAAGCTAAGgccCTTCTTTGAGGGAATGTCTCAGTCCAGCTCCCAGACGGAGATCGGCAGCCTGAACAGCAAAGGCAGTTTGGGTCGAGACACTTTCAGCCCGcagggggagcagcCTGCTTTAGAGAAGATGAAACACTCTCGCAGCCGCAACCTGGAGGAGGCCCTGTCTGAGACTGACACACTGgagctAACAGATCAGGAGCCGTTTGCTGAGGTGGGCCCCTGCATCATGGTGTCAGTAGCAGAGAAACCCCGTACACCTCTGAAGAGCAGCAAAAGTGAAATTCAGGCCATGCCATCGCCAAGGTTGGACGGGGGCCATACACCCAGACAAAAGCGCATTAGCACTCCCATGAAGGAGAGACAGCTGTCCAAACCCTTGAGTGAACGGACCAACAGCTCAGACTCGGAGAGATCCCCGGAGCTGGGACACAGCACGCCGcTCCTGAGGAAGGCAGTGTACGACCAGCTGAACCATATTCTTTTGTCGGACTCCGCCCTCCCAGAGAGCCTGATCTTGGTCAACGCCACTGACTGGCAGGGtcagTATGTTGCAGAGCAGCTCCAGGTACAGAGGCACCCGGTGGTCTGCACGTGTTCGTCGGCTGAAATCCAGGCGGTGCTGTCAGCTGTGCTCACTCGCATCCAGAAATTCTGTAACTGTAACTCGTCCATGCCCAGAGCGGTGAAAGTGGCGGCGGTGGGCAGCCAGAGTTACCTAGGAGCCATCCTGCAGTTCTTTGTCACTCAGCTCGCCAGCAAGACGTCCGACTGGCTCAACCACATGCGCTTCCTGGTCGTGCCTCTGGGCTCCCACCCGGTTGCCAAGCACCTCGGCGCCCTTGACAATCGCTACAGCTCCTCCTTTCTGGACGGGGCGTGGAGAGACGTGTTCAGCCGCTCTGAGCCGCCACAGACAGATCAGTTGGATGTAGCGGCAAGAATCTCCCAGTACATTAGTGGAGCCACAGTCACACACCAGCTGCCCATCGCTGAGGCCATGCTCACCTGCAAACACAGAACGCGAGATGAAGACTCCTACCAGAAGTTTATTCCTTTTATAGGGGTGGTGAAGGTTGGTCTTATCGAGTCTGGTCCTTCTCCAACAGGAGATACAGAAGAGGGCGTGGCGGTGAGTTTGGCTGTCCCATCCACGTCTCCCCCCTCCCACAGCTCACCCACAGGGATGATTAAAGAGGCAGCCAcgcctccctcctccccctctacGGGCAGCGTCCTGACAGTACAAGGGAGTCCCAGTATGTCTCACGGCGTGGACGCCATCGGCCTGCAGGTCGACTACTGGCTGGCCTCCCTGGCTGAGAAGCGGAGGGAGGGCGAGCGACGTGACACGGGCTGCAAGAACACACTGAAGAGCGCCTTCCGCTCACTGCAGGTCAGCAGGCTCCCAGGCGGGGGCAGCAGCGACCCACAGGCCCAGGTCAGCACCATGGCCATGACCGTGGTCACCAAGGAGAAGAACAAGAAAGttcCCACCATCTTCCTGGGAAAGAAGCCAAGGGAGAAGGATGTAGACTCAAAAAGCCAGGTCATTGAAGGCATCAGCCGACTCATCTGCTCTGCCAAGCAGCAACAGACCATCCTGAAAGTGTCCATAGACGGCGTGGAGTGGAACGACGTTAAGTTCTTCCAGCTGGCCGCCCAGTGGCCCACTCACGTCAAATACCTACCTGTCGGACTTTTCGGCTACAGCAAGCCCCAATCTTAGGGGTTCTCTGGTCCTGACTTGACCCTCAGCTCTCCTCGATCCTGTAACACTTTTGCGCAAAGACCCCGCCTCATAGCACCTGCAGATCTGAGAGAAGACGTCGAGTGGCTGGACTGTTTTCATTCGTTAGTTTCATTTTGGCTACAGCCGTCTTATTTCTCTTTGGAAAGGAGAGGCCGAGGAGGAAGAGGGTGGTGCTGGGGTGCAGCGTTGTTACTAGTCACTTTAATGcccctttttgtgtgtgtttgtgtgtgtggcgagTGTGCATGCACCCGTGAAtgtacagtgtgtctgtgtgtatgtgtgtgggtgtttacATGGGGCTTACAGCACAAGTTTATTAGCTAACTGCCATTTACGTTTCCGTTCTATGGAATGCAATAGCATGCAACAACTCACCGTTTTTAAGCCCTTAAAGTCTGACCCTCAACTTTTCGACCTCTTCAAGGTCCCACTCATCTCACTCGATCAAGACCTGATCCACACAAGCATGCTCACAGATACACCACTCATGTGCcgcaaaacaatttaaaataaaaaagtatcaCAATAGAGCTTCAGTGTTTGCATGAGCTAGcgaaaacacaaagaaaagtcTCCTCTGTTCACAAAATGCTGTCAAATACCAGGCCTGCATGGGATGAATTTCAACAGATTCCCTTCAAAAacagtacttttattttttatttcaagggCTTCCATAtaatttagaatatttttttctgtaccaaaatattcaaaataattcatttGGATGTCTAATGCCAAATGTTTCCTTtcaaaaaagaatatatataaaggggaagtgttttttaaaattgtGTTATTGTGAAAAATAGAAAAACCTTCCCTTGCGCTGTTTTGTGATGCATAGTGTACGTTTTTGTGAAGAGTTCCAGAATTTCAGGGCAGGGGCTACTGTAACACGTAGGTTTCTTTATCTTCTTATTTGCTATGCACTTAAAAATACACATCCGGGGGTTTGTAGAGTATAGCTGAATAGATTAACCCAAGCAAATATGCAACctgaaactgaaaaaacaaaatgcatatttaaacagtCCAAAACTCAGCAGCGTTGATGGGAACGTGATGGATAAACTCTGTTTTTCCATGAGTATCTTTACCGCAAAAATAAGAGTTAAACACCTGCAATAAAGCACAATGTTGTTTGCCAGTTGTCCCCATAACAATCTTTCTTTGTTGGCAACAGACTGGCAGCTTTCTCTTCAGTGAAAACAGTGgacctggtaaaaaaaaaaaaaaaaaaagatttataagCATTTTCCATTTCTCTTCAGACTTCTTAATAACCTTAATTttatcaggaaaaaaaaaagtatttgggTTGATGTCAGTTGTTTTGACACAGTTCTGCTACAGGCTTTCTCTAGGATGTCTTGAGGTGATTAGTGAGTGTACAGTAACTGGTAACAAGTGTGCTTGTATGTggtgaaataaatgtaatgtggtcagaaacttaaaaaaactaaatcactAAATAGAAGGAATACTTTTTTCTACCATGTGACAGAGAGCATgcaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcactgtGTGTTGATGATGTGGCCATTATCAATATCATTGATTATCAGATTAGGACTGCAAAAGCTGCAATGGTCGTTCTGTTTACTTTGTAGCCTGGCACAAGGCAAATTCAGATTTTCCACCActaaacacaataaaatacaaaatcacATAATAAAATTCTGTTTTATTGAAATATGTCGATTGAAATTCAACTAATTTCGGTGCAAATCCAAGAATGTTATCTGCAACAGTAGTTTATAATAATTGTCATAAAAGCAACATGCAATGCTTAACGGGCCCGTGTAGCTCTGCCTTGTGTCACCTACATCGTAACACTCACCCATCTCCGGTAAAGTATTtgaaaaattgtttttattaatagtCTTAATGCCAATGTCTTTGAtttaaatgctgtttttgttggtttgaaaatagattgttttagacagttgtttttttttctctcgatATTACACTGTTACAGTTGTGATGTCAGCAGCACGTCTCTAACTCGGCTCATTTTTCGGTTTGACAGCACCTGTTACACGTATAGGTTTCACACCGGAGGGTTTGCTTGTTTGTTCATTCTCGTATTTGGTCAACAGCTCATCTGTGACCACTGAACAAACACTCAGTTTGGCATTGATTTGATTAGAAGTACTTCCAAATATTTGAATGTATTGAATTTAGTTTACATGTGCAGTTTTAACGCACAAGTAGATGTGTTACTACAATATAATCATTTGGTGTTGTTTGGCCTGTGCAGTCATTTTCAAGTCTGCATGAACAGTTGACAGACAGCCAGTCTGGATACTTTTCCTGAACCTTTTTGTGTTAACAACAAAAACCAAACAGCACCCCCTTTGAAACCAGTCATTTTTCTTTACTTGTGATGCTGACAACCAGTTAAGGGcttgacagacagactgactgatAGCCTTCACACACGGGCTGGGTTTCAGTGTGTTGATGTACTGTGTTGATGTGCTGTAGTTTGACTGTAGTTTGATTTCATTccaaaaataattacatttgaaaatactGACACTAAAAAGCATACATCATTTGTTCTTATGAAACCTAATCTTAAGACatttgctataaaaaaaaaagtacattcaTCTCGGTACCGCTTTAAAATAACCCATACCAATTTGTCACTAATGACTTCATTAAcgttaataaataattataagaATGCATTGAAGTTCATGATTGATCTGCTATTATGCATTAATTAGGTCCCTCTGGTTATTtaacaatatatcaatataaaaacaatatggTTCTTACAACTGCACTTGTTTTTTAACAATGGGTCAAATTATTACATGGGATTTGAAATCTGTGGCTCATAGTGACAAACACCCAGAAAAGAATCACCCAACTCTTCAGTTCCCTTCAGGTCTACAGAgcgtttcagctcattgttttggtgtaAGGGCCTGTAACTACCAATTTGGGTTCACTCTCATGGCCCTCATCAGCCATCGCAAGCAGCTGATTTCATCTGAAAACCCAGTGTactctacctgctcagcaccaaacagcagacagacgcCGTTAGCAACTACCTGgggaacatagtggagcatttagcagctaaagagccagatatttacctcaggagttggtggagactcAAACAGAGCAAAAATGAGAGTGGATATAGGACTGGAATTCATAAGGTGGCCAGTAACACAGCTCAACTTGAATGATAGTGTTGCTATTAAGATCTGTAGTGTAAATAAGATAAATATATAAGATATAGTGTAGATGAACCAAAGGGATCCTTCAACCAAATATGCCAACACAGTCTAATTTACTTTATTCATTGTAATAGCATCTTGctgatcttttttaaatatttaataaagtTTAGTGACAActtagaatgtttttttattttaattatactTTATTATGAAATGGTACCGTGCTTTTTTACATTTGGAAAATGGATTCCAAAATTAgtcttttcaaaatgtatttacttttttgGAATGAAatgcttgattttttttttttttactgaaactGGAGGGTCAATGATCTTGTATCTGCTGTTAGAGACAACCTCTACTAACTCAAAATGCTCTTTGCCTTGTAGTGTTGGTAGCGTAATTAATGCAATCATGTGAATCTAAACTTTTCCTAAATGGTATATTGATGCCTCTTTTCGCTTGCAGCCTCCACAGAGAGGTTAAAGGTCAACTGATTCCCAGCTTACTGCTCACTGATTGAACTGAACTTGGAAATATTTGTCTGAAAGAGAAcgttaaaaacaaaatcactgcCAAAACTAAAATGTGAAGAAATTGTGATTATATTCAGATAGATTTATGGAGGTTTTTGGGGAGGTTGCTGATAACTGAAACCAACACAAGTGATGCTTGTTCTGAAGTCACAATTTCAATGTTCACAGCCATGTTCAGCAGCTTTTCTTGATCTTTCATCACCAACTATCCCATCATTCTTACAGTTTACACGTTTTcctaaagtctcttttaaaaaCGCTGGTTGTTCTGTAAGTCTTGAActtgttcctgtgtgtttttaccTGTACCTCTGTATCTGTGTCGGCCGGTGTTTGTGACAGTGTAACGATGGTTCCTCTGACCTTGACTAGTCGTGGTTAGAGATTAGGAGCTGTTTGGTCCATCAATAATCTCTGTCAGTGATCAGCAGTGTCTTTTCTCTCCACCGTCCTCAGATATACCTCTGACGATGAGAGAGTCTTCTTCACCAGGCATCCACAAGCTTAGCTTTCTAAAGTCATGTGAAATGATATTGTTCCCATTCCCTAACAGCTTGTAAATTCCGCCGTGTGTCCTCATGGGAACAGGATTTCCCTATAAAAGCAGTAGATTTCTGCTCAGCTCAGAGTGTCCTAAGCTTGTGGACTTGTGGAGAGTATTTTGCACATTCCATTGTTTCTTCAGCAGCAGTCTTCAGCTTTTTTGCCTTTTGCCTATAACAATAATTATGATAAACTATAATGCTTGTACATATCAGATAGTACTTGTTATATTAGTTCTGTTCTTTGTATTAATTTGACATGTTTTGTAGTACTGCTTTTTCATGATTACTTTTGTCAATCAAACAGATGTGGAGATTAGAAGTGTTCattgtttcatttgttttttttaaataaaaatattcctGATTTGTAA

Function

GO: NA

KEGG:

id description
K23290 PACS1; phosphofurin acidic cluster sorting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194935 lncRNA downstream 31325 19247950 ~ 19251608 (-) False prkd4
TU194954 lncRNA downstream 47409 19234321 ~ 19235524 (-) True G144476
TU194880 lncRNA downstream 182096 19100428 ~ 19100837 (-) True G144425
TU194879 lncRNA downstream 182703 19099980 ~ 19100230 (-) True G144424
TU194878 lncRNA downstream 183736 19098894 ~ 19099197 (-) True G144423
XR_005641453.1 lncRNA upstream 190865 19544171 ~ 19546423 (-) True LOC120572478
TU195108 lncRNA upstream 313152 19666458 ~ 19667497 (-) True G144585
TU195330 lncRNA upstream 363678 19716984 ~ 19815341 (-) True G144735
XR_005641743.1 lncRNA upstream 386052 19739358 ~ 19742781 (-) True LOC120573676
XR_005641745.1 lncRNA upstream 393199 19746505 ~ 19746825 (-) True LOC120573678
XM_039822004.1 mRNA downstream 1477 19266453 ~ 19281456 (-) False klc2
XM_039822003.1 mRNA downstream 1658 19266453 ~ 19281275 (-) True klc2
XM_039822001.1 mRNA downstream 16580 19251587 ~ 19266353 (-) False prkd4
XM_039822002.1 mRNA downstream 16580 19251587 ~ 19266353 (-) True prkd4
XM_039823233.1 mRNA downstream 97142 19155032 ~ 19185791 (-) True gal3st3
XM_039822119.1 mRNA upstream 4057 19357363 ~ 19369538 (-) True sf3b2
XM_039822121.1 mRNA upstream 4392 19357698 ~ 19369635 (-) False sf3b2
XM_039823439.1 mRNA upstream 50175 19403481 ~ 19406358 (-) True pnp5a
XM_039821810.1 mRNA upstream 158722 19512028 ~ 19523990 (-) True LOC120572474
XM_039821809.1 mRNA upstream 175854 19529160 ~ 19553841 (-) False LOC120572473
unassigned_transcript_712 other downstream 217692 19065160 ~ 19065241 (-) True trnas-gcu_6
unassigned_transcript_711 other downstream 311470 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_710 other downstream 315920 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_709 other downstream 317496 18965366 ~ 18965437 (-) True trnad-guc_5
unassigned_transcript_708 other downstream 545781 18737082 ~ 18737152 (-) True trnag-gcc_1
XR_005641381.1 other upstream 303777 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU195325 other upstream 423374 19776680 ~ 19797530 (-) True G144730
XR_005641682.1 other upstream 1473977 20827283 ~ 20863889 (-) False LOC120573300
TU195751 other upstream 1562335 20915641 ~ 20917175 (-) False LOC120573168
TU195934 other upstream 2010676 21363982 ~ 21367646 (-) False si:dkey-172j4.3

Expression Profile