RNA id: TU195376


Basic Information

Item Value
RNA id TU195376
length 1932
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G144776
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19877674 ~ 19879627 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtatgtggggGAGATCTTAAACCCTCTGTCTGGCAGAAAGCATCAGAAACACAACAAGGTCCAAAGTTTAGAGAATGTGTTGTTGTCAACGGCTGTTTCCATGGTCAAGAATGAACCTTTGAGGTTGAGATTTATCATCGTCTTTGAAGGGTTATAACAACTACGGTATATAAGGATAGGGGATTCCCCAagtgtgggatcaataaagtctatccTAGTGTGTGTTGACCTTTTTACATCCAGGGATTTTTGACATTGTTATTGAACATCTGTGGCTCTCAAAGCACCTGGCCTCTTGGTTGCCAACATTAGGAGTTGACACTGTTACTAAGCCACCAGGATTTTGTCATCATCCTGTACTATACTTGCGTTTCAAGGATGTTGTCATACTAAAATATCTCTTGATGTCGATTCACTCTGTCACTCAGCTGCTTTAAATATGACTCATGTTTCCTGTAGAAAAATCCCTTTTTGTCTTTTGCTCAGcgattttcaaataaaatgtgaGGCAAGATTAACCACATGAAATCTTGTAACATGGCTGTTTCTGTTATGAAATAGTGGACAGAGATGAAAGGAAGGTTGCTTTTGTGAAATGTTTCTTATGCAATGATCTGCTCATGCTGCTGAACATTGCATAAGTGAACAATTCATTTTGCAAGCCAGTACTTCATGTACTCATCTAGAACTCTTGTTAAAATACACAACAGAAGAGATTCAATATTAAAAAAGCTTTATTACGTTAAcaaacattgtCTTTTGTTTTTTGACTAATGGCCATAGAAGTTACTATTAAATGTAAAACAATATTCTCACACATCCAAAATATATCTGATCATTTAAATAGCCATATATACATCAATTATTATGTATATGAAGTCACTGCCATAGCTAAGTCAAACATTGATTTTTAGACTTGACATGTAGAAAAGGTGGTTTTTACCTGTGAACACCTTTTTTGACACAGCCATACTACTTACATTGGTGGTTTAAGTTAATGTTCACGATCTTAacttagcgtgttagcatgcaaGCATTCAATATTTAGCACTAAACAGAAAGTACAGCTGATGGGAATCAAtgttgcaggtatttggtcacaaTAAAAGTACAGGACAAATTCTAAATTACATCTGATAATGGTACCAGGGTAAGTTAGGGTACATTTCTTGCGGTCTATCCTGAGGGAAATGTTATTGTGTGTAcgaaatttcatggcaatcaatCCAATAGTTGATGAGGCATTTCATCcacaaccacaaatgtcaaacCTTGTGGTGGCTTTACAGGAaatgtcaggggatcaccaaagtcattagatTCCtcatctggggaccatgaatgtctgtacaaaattggGCGCCAATCCATCAAATCATCTTATTTAGTttttgtaccaaatttcatggaaaTCCATTCAATAGTTGTTGAAATATTCCCTGATATAAAAGTCATGTAAGTAAAGTTTGATGATGCAAATTACGAGTCAACACAGTCTGTGTCTAATCAATGAGTTAGGGAAAGTAGGCCAAGGAAAAAAAGCTTGGGTTTGGAGTTTAAGCACTATTCTATCAACTCAACACTGGCCAAAGTCTTGAGTTCTGGCTGATCGACCTCTTTGCCTGCCACACTGCTGCTCCTATACTTGTTCTTGCCTTTGAAAGGACTTCCCAGTTTGGTTGACAGCGTGTGCAGGACAGAGCTTTCATCCGGTGAAGAGCTGCTGCGGCTCATGCGGCCGCTACGGGTAGACATGCTCCTGCTTTCCGAGTTTGTGGCCTCGAAGAGCTTGCCCATGAAGCTGAGGCCGGCCTGGCGGATGTGGGAGCTGCCGGCGAACACGTAGAGAATGGGGTTGACAGCGCTGCTGAAGTAGGCGAAGGCCGTGACATTTGGACGGGCTACAAGGGCGGCCTTGATCACTGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195330 lncRNA downstream 62333 19716984 ~ 19815341 (-) True G144735
XR_005641744.1 lncRNA downstream 121952 19755220 ~ 19755722 (-) True LOC120573677
XR_005641745.1 lncRNA downstream 130849 19746505 ~ 19746825 (-) True LOC120573678
XR_005641743.1 lncRNA downstream 134893 19739358 ~ 19742781 (-) True LOC120573676
TU195108 lncRNA downstream 210177 19666458 ~ 19667497 (-) True G144585
XR_005641412.1 lncRNA upstream 48890 19928517 ~ 19932978 (-) True LOC120572271
TU195399 lncRNA upstream 108947 19988574 ~ 20039742 (-) True G144797
TU195397 lncRNA upstream 115173 19994800 ~ 20039742 (-) False G144797
TU195406 lncRNA upstream 134821 20014448 ~ 20016488 (-) True G144803
TU195419 lncRNA upstream 182183 20061810 ~ 20062338 (-) True G144816
XM_039822512.1 mRNA downstream 175451 19679255 ~ 19702223 (-) True arhgef11
XM_039823388.1 mRNA downstream 200052 19667699 ~ 19677622 (-) True LOC120573581
XM_039821372.1 mRNA downstream 211882 19657083 ~ 19665792 (-) False si:cabz01074946.1
XM_039821860.1 mRNA downstream 289597 19587130 ~ 19588077 (-) True LOC120572523
XM_039821807.1 mRNA downstream 324096 19529160 ~ 19553578 (-) True LOC120572473
XM_039821505.1 mRNA upstream 713 19880340 ~ 19894923 (-) False LOC120572266
XM_039821504.1 mRNA upstream 713 19880340 ~ 19894923 (-) True LOC120572266
XM_039823141.1 mRNA upstream 185169 20064796 ~ 20070624 (-) True cbln11
XM_039821862.1 mRNA upstream 201114 20080741 ~ 20085137 (-) True LOC120572528
XM_039823413.1 mRNA upstream 207820 20087447 ~ 20093439 (-) False si:ch211-63p21.1
TU195325 other downstream 80144 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 211882 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 524382 19350510 ~ 19353292 (-) False LOC120572670
unassigned_transcript_712 other downstream 812433 19065160 ~ 19065241 (-) True trnas-gcu_6
unassigned_transcript_711 other downstream 906211 18971392 ~ 18971463 (-) True trnad-guc_7
XR_005641682.1 other upstream 947656 20827283 ~ 20863889 (-) False LOC120573300
TU195751 other upstream 1036014 20915641 ~ 20917175 (-) False LOC120573168
TU195934 other upstream 1484355 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 1502639 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 1524228 21403855 ~ 21434195 (-) True G145209

Expression Profile