RNA id: TU195399


Basic Information

Item Value
RNA id TU195399
length 3199
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G144797
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19988574 ~ 20039742 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGTTTAACAGTTTATTCAGCCTCAGAGAAAGAAAGTAATTGCTTacataaaactcaaacaaatggGATACATAGATTTTACATGATATAACAATCACCAGATATTCaccaaaagtcaataaaaagaagaaaatcaaaCCTCTATACTGTAGATTGGTGTATTTATTCCTTTTCCTGCCATACATATGGGTGAAACCTATACATTTTGAATTATACAGAAAACTAAATACAACCTCAATAGATGAAAAAAGGATCCACATATGAAAATATAACAACTTcaggaaataaaaaatagtgATCATTCAGGCGAATCAGAATCAGGAGACAGAAAAACCTGTTACAGGATCATATCCTCAATAATCTTCCCTCAATCTAAAATCTGCTGTTAGAAAGTCTGTTAGTAATTTCATATCTCTCCCCCTTCGGTTGTGATTtgtacatttcccagaatgccagTCAATAAAATCAGAGGCTATACTCCTGTATACTGTGTCAACGTCACACCACTGCAAACAAAGTGAaaacaataattaaaacgCCAGCTACCAGTGAGTAGAGGGTTTTTACTTAGAACAGATCAAATTAAACTCCTCATTGTCAGTCTTTTTGAACCACTTATGTTGTCCTCCTCTGTCCATGACTCCAGACATGTCACAATCATTATCCGTCTTATGCGAGTCCCAGTTCTTACAGCAGACCACCTCATCACTGACCCAGAACTAGAACTGCAGAGTGCAGGTGTAGCGCGGTCCCAGCTAGACATAAGGACTGTCGGCCTTCTTGGCTCTCTCTTGGACCCATCTCTGCTGGTCGAGGTTGGTGATGGAGACCAGGTCACAGTGGTGCTCTCTGCAGTAATATAAGGCATCCTCTCAGATTTTGTTCTGATTATTCAGGATCACTTTTCACCAATATAAAGGTGTTCGCCCACAAGGTAGTGTTTGGGTCTGGGTGCGTCTTTGCTTTTACCGGCAGCCTTTGGCCAGGGGCGCTGACTAAGATTAGAagatagtctcacattgccagaccttcctccacagctctgtccACACAAGactctgggataggagaaaatgtgctctggtttattggcatttctttaaaccaatcacaattgtcttgggcggcgctgagCACCTGACGCAATaatggagccgctgcaaaaatAGCCTCATgaaggaacttattttggtggaacgtgttcaaaagttgttttagtcgtgcaacagaaaactcatatTGGACTGATTCTAGCTATCTGTCTCGATTTACCCTGCAAAGATCTGAGGAGCGGTTAACCATAGCCCTCAAAAATCGACAAGAGTTAAGAATGCCAACACAATAAAAGTAGAAAGTGAAGGACATCTGGCCATTGACGAAATATCCGGCGGCatgaaacgttgtcgatatagactatccTAAAGATGATATTGATGAGAGTGATGTAAGTAACTACATGGTGTTATCTTCCATCCCTGCCTCTAAGAGCTCTTACAGCGAAAACACACCGGGCGTTTAACATAGCGTATATATAGCCCGCAAAGTGTAGATGCGTCCCTGATCGTGCCTGGCCATTCATACCTGACATGTTATTTCCACACAACGGTCACAAagccctctctctgtctctctctgtctctctctgtctctctctctcaatctccctctcactctctctctcgtaaAAATTGGATGAGGCATTCACTAACGCCCCTAGTGGCCAATATTCGCTAAATTTGTTCCAGTGCATTTGAGGGTCATGCCAAATGAGgatcttaaagcaacactatcgCTACCGACGcaagttgtagttccaatgagacaacatGTAGGGCTAAAAgttctttagtgttgctttaactttTGTGTTGATAGCATTTAATTTGGCCAATATATGTAAAGGTTTGCGTTATGGTTGCTAACtacaaatatttgtttgtttgtagttTATGCATCTTTAAAGCTaccaaaattcttttgatatatATTTGTCAGCTTCATCTGGAAATGCTATGcgccaagtttcgtgcagatcggggCAGGaggggttaaaaaaaatgttggtttACGATAAATTGCGATTTTACTTTGATAACAATCTAGGCAGAAATGGCTGTGGTACCATTTGGTGCCTGAGTTACGTGTCACAGTCTGTTCCACCCCTGAAAGTTTCACTTGCGtaagtacagtacagtgtaggCTGCAGTATGAGTTTTATTGAAGGAAGAATAATAACTAGAACAGCAAGCAGTTGTGAACGGGGTCAAAGCCCTCTGGCGCAAGTTAATTATTCACAAGTTATGCAACTCTGTTTTGACTGCAACCTGCAGgaagtcttttttttgtcacaggGGTCCATAGATTATACATGCTAATCTTCATGTAGATAGGACTCTTGATCTAACAGGAGTTAGAAAAACTAGGTTTTGCATATATCGTGATTTTGCATATATCGTGATTTTGCATATACCGCGTTGCCTTGCAAACACGGACCCCAGCCCCCTcaggcttggacccctaataaaaaCCTGAGCGATTTCATTAGAGTTCCCAGCTCTGCTGGTAATGGGGACCGCATTGCCTTGCATAGGCTGGTTcctacccctctctctctctctctctctctctctctctctctctgtgtgtcactcTGTCGGTCCgtccgtctctctctccgtgtgccTGATTGCGTGTCTCgctgtgagaagtcaagacagccaaaatcaccatgaACGTAGTGTTTCATTTTTACACGCAAGACATATAGTAGACGCCGAAATGATTGCTAGACCGTGCAGGCCGACATGGATGCTACAAGCCCGGTATGAACAcacagattggataacatgggcgGCGAAATAAAACTAGCTGCGCTACGTGGCTATACACAACGCTTATGCGccggtgtttttttgctgttaCTCTGTAAATTCCACTCATTTTCTTTATGTTGAAATATTAGTTATAGttaatattatttaataatacTTTTTAACGCTTTACTGTTAGGTTTCTGTGTCTTAATTTAGTGTCCATCCCTGTAAGACCATTTATTAATTCACTGGCAGTAGAAAGTGAGCACATCCTCCTGGTTTCCTCGTATCAGCACCACAGGGCAGTGGAGGCCACAGGTCAGAGTATCCAGCCAGGCCATGTACAGAGCACTAGTGCAGTCGCTGTGTGGCACAGGAAGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641412.1 lncRNA downstream 55596 19928517 ~ 19932978 (-) True LOC120572271
TU195376 lncRNA downstream 108947 19877674 ~ 19879627 (-) True G144776
TU195330 lncRNA downstream 173233 19716984 ~ 19815341 (-) True G144735
TU195419 lncRNA upstream 22068 20061810 ~ 20062338 (-) True G144816
TU195422 lncRNA upstream 27338 20067080 ~ 20068405 (-) True G144819
TU195448 lncRNA upstream 73974 20113716 ~ 20113941 (-) True G144838
TU195449 lncRNA upstream 86690 20126432 ~ 20126660 (-) True G144839
TU195450 lncRNA upstream 90448 20130190 ~ 20159328 (-) True G144840
XM_039821505.1 mRNA downstream 93651 19880340 ~ 19894923 (-) False LOC120572266
XM_039821504.1 mRNA downstream 93651 19880340 ~ 19894923 (-) True LOC120572266
XM_039822512.1 mRNA downstream 286351 19679255 ~ 19702223 (-) True arhgef11
XM_039823388.1 mRNA downstream 310952 19667699 ~ 19677622 (-) True LOC120573581
XM_039821372.1 mRNA downstream 322782 19657083 ~ 19665792 (-) False si:cabz01074946.1
XM_039823141.1 mRNA upstream 25054 20064796 ~ 20070624 (-) True cbln11
XM_039821862.1 mRNA upstream 40999 20080741 ~ 20085137 (-) True LOC120572528
XM_039823413.1 mRNA upstream 47705 20087447 ~ 20093439 (-) False si:ch211-63p21.1
XM_039823412.1 mRNA upstream 47705 20087447 ~ 20093439 (-) True si:ch211-63p21.1
XM_039821594.1 mRNA upstream 128297 20168039 ~ 20173402 (-) True LOC120572322
TU195325 other downstream 191044 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 322782 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 635282 19350510 ~ 19353292 (-) False LOC120572670
unassigned_transcript_712 other downstream 923333 19065160 ~ 19065241 (-) True trnas-gcu_6
unassigned_transcript_711 other downstream 1017111 18971392 ~ 18971463 (-) True trnad-guc_7
XR_005641682.1 other upstream 787541 20827283 ~ 20863889 (-) False LOC120573300
TU195751 other upstream 875899 20915641 ~ 20917175 (-) False LOC120573168
TU195934 other upstream 1324240 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 1342524 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 1364113 21403855 ~ 21434195 (-) True G145209

Expression Profile