RNA id: TU195422


Basic Information

Item Value
RNA id TU195422
length 967
lncRNA type intronic
GC content 0.40
exon number 2
gene id G144819
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 20067080 ~ 20068405 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGAGAACCTTTCATCAAAACGACTTCACAAGGGAGTGCAGTGACGTATTTGGTGCAATATAAATAGACAGGCCAGACGCGTTCAGAATTAATAACCTTTTAACCTTTCAAGGATCATCGTCCGTCTACGggacactttgtgactttgttttccatttccgcacttgttatCGCCATTGACATATAGGttatcgccgctagcttctctgcccagcttgctaaaTGCTCCGGAGTGGGGCGTCATGCGTTAACTCGAcagtatcttcttcttctttgtagtttattggcggttggcaaaccaacttaaatgtgcattaccgccaccaactggactggagtgtgaacgagagataaatgcagaaaatacataaaccaaaataaaaaaaataaaaaacgaatattcgaatgtcaaattttaaaatcgaataccaacccaccgaacgaatatttgaatattcgggtccagccctaCTAAACAGCAAAGCAGCAGAATTCCCTGGAGTCACAGTTCAACAGCAAGCTGGTAATCACTTTTATCTTTATAAACCAACAGGTAGGCTACAGGATCTGCATCAGTGCAGAACAAAATCACAACATCACTACCGGTGGtggaagaaatattcagatcttttacttcagtaaaagtattaataccatactgtcctgcattgaaaatgttacttaagtaaaagtatgtaagtatcatcaggaaaatgtacttgaaaTAGTTAAAGTGAAAATACTGAATGTCTAAAAATCCTCATATTctttaaacaaaccaaacagtACTGTCAATCAActagtgtttaatggtctcatcatctcagctggacttgtagccgttatattgttggctagtttactttagaatcaaagcagcagggacggactgggaccaaaaattggccctggcattttggccCAGACCGGCACCACATCACAAATACCAGCTGTCCTTGCGCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195419 lncRNA downstream 4742 20061810 ~ 20062338 (-) True G144816
TU195399 lncRNA downstream 27338 19988574 ~ 20039742 (-) True G144797
TU195397 lncRNA downstream 27338 19994800 ~ 20039742 (-) False G144797
TU195406 lncRNA downstream 50592 20014448 ~ 20016488 (-) True G144803
XR_005641412.1 lncRNA downstream 134102 19928517 ~ 19932978 (-) True LOC120572271
TU195448 lncRNA upstream 45311 20113716 ~ 20113941 (-) True G144838
TU195449 lncRNA upstream 58027 20126432 ~ 20126660 (-) True G144839
TU195450 lncRNA upstream 61785 20130190 ~ 20159328 (-) True G144840
TU195452 lncRNA upstream 94773 20163178 ~ 20179576 (-) True G144842
TU195464 lncRNA upstream 131736 20200141 ~ 20202103 (-) True G144853
XM_039821505.1 mRNA downstream 172157 19880340 ~ 19894923 (-) False LOC120572266
XM_039821504.1 mRNA downstream 172157 19880340 ~ 19894923 (-) True LOC120572266
XM_039822512.1 mRNA downstream 364857 19679255 ~ 19702223 (-) True arhgef11
XM_039823388.1 mRNA downstream 389458 19667699 ~ 19677622 (-) True LOC120573581
XM_039821372.1 mRNA downstream 401288 19657083 ~ 19665792 (-) False si:cabz01074946.1
XM_039821862.1 mRNA upstream 12336 20080741 ~ 20085137 (-) True LOC120572528
XM_039823413.1 mRNA upstream 19042 20087447 ~ 20093439 (-) False si:ch211-63p21.1
XM_039823412.1 mRNA upstream 19042 20087447 ~ 20093439 (-) True si:ch211-63p21.1
XM_039821594.1 mRNA upstream 99634 20168039 ~ 20173402 (-) True LOC120572322
XM_039823229.1 mRNA upstream 175124 20243529 ~ 20244965 (-) True LOC120573477
TU195325 other downstream 269550 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 401288 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 713788 19350510 ~ 19353292 (-) False LOC120572670
unassigned_transcript_712 other downstream 1001839 19065160 ~ 19065241 (-) True trnas-gcu_6
unassigned_transcript_711 other downstream 1095617 18971392 ~ 18971463 (-) True trnad-guc_7
XR_005641682.1 other upstream 758878 20827283 ~ 20863889 (-) False LOC120573300
TU195751 other upstream 847236 20915641 ~ 20917175 (-) False LOC120573168
TU195934 other upstream 1295577 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 1313861 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 1335450 21403855 ~ 21434195 (-) True G145209

Expression Profile