RNA id: XM_039822683.1


Basic Information

Item Value
RNA id XM_039822683.1
length 4593
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC120573168
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 20906455 ~ 20929559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCCTTTAGTCGCGCTCGGAACTGACGCTCGTGGCGCAGGACACCATGCAGAGTTACGGGATCATTTCGACTTTTCAATCCGGTTTTAACGGTTAAAAAGATGCGTTTGAGTGCTCTTTGACAACAATTAAAAAGATGACGGAGGAAGATGAGCGATAAATACGCAGATAGGAGCCCCTCATCGTGTGTATGACACTGACGTTAAGTCAGAGGGAGAGAGCGACGGGAGAGACGGCAATAAACAATGAGTGAGACTCCATCCAGTATGCATCTGCACTCGTCAAAAGAGATTGTGCTATGGTTTAAGAGTCCTTACCAGTGATCTTTGGGACTTAACGGATCTATGTAACCTCAAAAGAACACCGTCTTCATTATTGGCGTCATCATCATAATCTATTTGGATAATATCTTTTTAGCTGTAGGAGAGGATTTAAAACAGGAGCTGGACTCTTGCTGGAACAGTCTCAACATTGCCATCTTATTTTTGTTGTCTTAATGAATTTAATCTGACACACAGCCAAAGGTGGAAGCTCTCCCTGTTGCACAGACCTAAACAACACCTGACAAGGAAAcgacaaataaataaacactataCAGTGTATTTATTATGtagactgagagacagacagccagaAAAAGCAAAGTGACAAGTCGATAGACGGCGAGATCCATCACATTCCCACAGGTCGCAATGCCAGACGAGTTACAAGGTTTTCAGGAAAAGGATAGGCCTGGAGAAGAAGCACCACAGGTGTCTTTAGTGCCGAACGTTGTGGTCGTCTCCAGTGATAGAGCGGGCAAAATCCCTGGAGGCAATATCCTGGAGCTTGACGACTTCAGTCAAACAAAAGACTCGGCACAAAGCAGTGACATTAACATTTTGCAAGGGAATGACGCCAAATTAAATGCAAGCAATTCTACTGCCGTGAGTCAGTCAGGACTTGGTGATTCCCAGGTTTTCGTAGAGGTTGGTGTGGCCAAAACAGCGCAGGCCACTAAACCTCTCAAGGCCAATTCTTGGTTGAAGGGAACAGGTGTGACTCCGCAGGCTACGGATCATGATGCTCCAATCAACTCATCCTCTGACAGGCTACAAACTGACAGCACCTCATCGCAAACGAACGGCTGCAGTGCGCTCGATGGAAAGCCCTTTGAAAAGACGAAACCTAACACTCCTGTCAATTTGTCTGAAACCAGTTTAGACACTTCTAACAAAAACACCAAGAATAGTCCAGACGATGAAAGAGGTGATTCCAAAACAGACCTTACTGTTAAACCAAAAGCAGAAAACTCACTCAGCGGCAGTACGCCCGCACTCCCCGAAGTTTCATTCAAAGTTGCCCAAACAAGGCAAAGCATCGATGTCAGGTGGGATGACAAATACGGAGACGAGGATGACCGCGAGGAAAGGCAAAGCAATCGATCCAGGCAGAGTGTGAAAGAGGGGGTGTGTTGCTGCTATCAGGCGTTCCACAGGGCTTTTCTGCAGTGCGTGGAGGAGACTCCGGCCATGCTGACAGGACTGGTGCTGTCTCTGGCTTTCTGTGTGACCCTCATCGTCATCATTGCCACCACACGAATGAACATCATTTTCCATGTAGCTGCTCTGTCAGCGCTGTGTGTGGTTCTCTGTCTGAGTGCCATCCTGCTCGTCTGCCTGCCCTGGCTGGCCACCTTGAGGCGCTGTGGAGGAGCCCTGGCCCTCTTCGTCTGGGGGACGCTGTATGTCATCGCCATAGTCTTCATCTTCACTGGGGGACCTGTCACTACTTGGGAACAAGTAGGgtttttcctcttcctttctctgAGTGTGTACACAGTGCTGCCTCTCTCTATGGCCTGGGCCCTCATGTTTGGGATTGGGACCAGCCTTTcgcacatcatcatcataagcGTCTACGTCCCTGTCACAAGCCCAGAGACACCAGACATGGCTGTGCAGCTGGTGGCAAATGCATtgctgtttatgtgtgtgaactgCGTCGGGATTTTCCATCTGTGGATGACGGAGCACGATCTCAGGATATCCAATCGAAAGAGAGAAAAGTTCAGCAACATACGCTCCCGGAAGGAAATAAGGAAATATCAgcagGAGCAGCTCCTCCTGTCTGTGTTGCCACGGTACATCGCCATGGAGCTGAAAACGGAGGTGATAAAGAAGCTCTTCAGGCCCAAGTGCGATGACAAGAAGGAGCCCAACTCCAACAACTTTCACAGCCTCTATGTCCGGAAGCACAAAGACGTCAGCATCCTGTATGCAGACATTGTGGGCTTCACAGAGCTGGCGAGTAGCTGCACTCCAGAAGAGCTGGTCGCTGTGCTAAACAAGCTCTTTGGCAGATTCGATGACATCGCCAAGAAGAATGGGTGTCTTCGCATTAAAATCTTGGGTGACTGCTACTACTGTGTATCTGGTCTACCTGACCCCATTCCCACGCACGCCAGGAACTGTGTTCAGATGGGGCTGGACATGTGCACTGCCATCAGTAAACTGCGAGAGGCGACGGGGGTCGAGATCAGCATGCGGGTGGGTGTTCACAGTGGAAACGTGCTCTGCGGTGTGATTGGCTTGCAGAAGTGGCAGTACGACGTGTGGTCCCATGACGTCACGTTAGCCAACCACATGGAGTCTGGAGGTCTTCCTGGACGAGTCCACATCACAGAGGAGACAATGCAGCACTTAAACGGAGCATATATAGTGGAGAACGGGGATGGGGGGAGTCGGGATCCTCTTCTTAAAGGAAGAAATACGTACCTGGTGATGGACCCCTGCAAGCCGAACAGCATTTCCAGTACACCTAAATCGGCAAACACTCTTAAATCAGGAGAGACCAGGCTGCGGGCGTCAATCCGGATGTCTGAGTACCTGCAGTCCTGGCGGACTATCCATCCCTTCGCAGACCTAAGCGACCCTAATGCCACACCCTCCAAGAAGAAAAAAGTCCCCACCAATTTCGCTATGAACCAGTCACAGCTGTCTGCAGAAGGACCACCTTGCCAGAACAACTCCGACTGTTTGGTTGTGGATAACAGTGTTAGGGGATCACTGGGATCACTGGACCCACTGAATAATGCAGGGAAGAGAGCAAAGAAGCTCAACTGTTTGACTCTGCTGTTCAACGACCTGAGCCTGGAGAGAGAGTTCCGCCTTTCAGAGGTAAAGGGTGTACACCATTCAATGAGCTGCATAGCTTTGATCTTCGTCACTCTTTTTGCCGTCCAGATGCTTGTCTCTAAGAATAACTTTGAGATGGCAGTGTCGTACGGTGCAGCCTTCCCTGTGCTGGTGCTGCTTCTGTCCATCGCTTTCACTGGATACCTGGAGAAGTGGCAATCCAAGATGCCGTTGAATGTTCAGTGGATCTCAGGGCTGTCGCGTGGCGTCGCCACCAAGGCGGCGCTGCGTCTGTTTGTGGTCACTCTCTGTGTTCTCATCACCCTGCTTATGGCCATCCTCAACTTTGTCTTCCTCCCGGGAAACAACTGCACATCGATTACCAACAGGACAGAGCTGGAGGGTCTCAAACTCTACACTGTGCCTTACTACCTCTACTGCTGCCTGTTGGCCATGCTGGGAGTGATCGTGTTCATCAGGACAAGCATGTCTGCGAAGGTCCTGCTGCTCACCCTGGCGGTGGTGGTTTACCTGGCCCTCTTCCTCCATGTTTACGCACCGAGGTCCTACTGCCTCATTAACCTGCTTTACAACAACACCCAACCAGGAGTGCTGAAGGACCCTCAGATCATGTCCGGGGTTTGGCTGGTCATCTTTTACATTGTGTGCCTCATTCTGGCCAGACAGGACGAGCTGGGTTGCAGAGTAGACTTCCTGTTGGACCGCTGTTTCAagacggagagagaggagatggagaCCATGGAGAACGTCAACAAGCTCCTCCTTCAGAACGTCCTGCCGCTCCATGTCGCCTCCTTCTTTATGGGCAAAACTGTCCGCAACCagGACCTGTACAGTCAGtcatatgactgtgtgtgtgtgatgttcgCCTCGGTGCCTCAGTTCAAAGAATTTTACAGCGAGAGCAGCGCCAACAGGGACGGTCTGGAGTGTTTGCGCTTCCTCAACGAGATCATATCAGACTTTGATGAGATTCTCTCAAAGCCCAAATTCTGTTCAGTGGAGAAGATTAAGACTATCGGCAGTACGTACATGGCTGCTGCGGGGTTGAGACACGCTCCTCGACGGGACGAACAAAAGAAAGTGGAGGTGTCCTACAGCCATGTGCGCTCCATGGTGGAGTTTGCCATCGCTCTGATGGGCAAACTGGACCTCATCAACACACACTCTTTTAACAGCTTCAAACTCCGGATCGgAATAAACCACGGTCCAGTGATTGCAGGAGTGATTGGAGCTAATAAACCTCAGTATGATATCTGGGGGAACTCTGTTAACGTGGCCAGCAGGATGGACAGCACAGGAGTGTTGGATAAGATACAGGTGACGGAGGAGACAGCCCAGATTGTCGAGAGCGTGGGATACACCGTCACTCTCAGAGGAGTAGTCAACGTCAAGGGCAAAGGGGAACTCACCACCTACTTTATTAACACGGACCAATCGTCTCCTCACTTCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195688 lncRNA downstream 40078 20864825 ~ 20867088 (-) False nop10
TU195686 lncRNA downstream 61913 20843574 ~ 20845253 (-) True G145023
XR_005641691.1 lncRNA downstream 120777 20783569 ~ 20786389 (-) True LOC120573348
TU195639 lncRNA downstream 196393 20679910 ~ 20710773 (-) True G144996
TU195755 lncRNA upstream 1507 20931066 ~ 20931721 (-) True G145076
TU195827 lncRNA upstream 47096 20976655 ~ 20978016 (-) True G145112
TU195809 lncRNA upstream 126265 21055824 ~ 21057799 (-) True G145106
TU195810 lncRNA upstream 170590 21100149 ~ 21100806 (-) False G145106
TU195863 lncRNA upstream 229343 21158902 ~ 21161476 (-) True G145141
XM_039822685.1 mRNA downstream 1625 20893966 ~ 20905541 (-) True si:cabz01101003.1
XM_039823533.1 mRNA downstream 14332 20887610 ~ 20892834 (-) True emc4
XM_039823534.1 mRNA downstream 14333 20887610 ~ 20892833 (-) False emc4
XM_039823562.1 mRNA downstream 21576 20875615 ~ 20885590 (-) True lpcat4
XM_039822962.1 mRNA downstream 40060 20864757 ~ 20867106 (-) True nop10
XM_039822648.1 mRNA upstream 4959 20934518 ~ 20946982 (-) True khnyn
XM_039821558.1 mRNA upstream 34149 20963708 ~ 20969411 (-) False si:dkeyp-74b6.2
XM_039821557.1 mRNA upstream 34149 20963708 ~ 20969395 (-) True si:dkeyp-74b6.2
XM_039822497.1 mRNA upstream 115997 21045556 ~ 21050288 (-) True LOC120573065
XM_039822498.1 mRNA upstream 135609 21065168 ~ 21070082 (-) True LOC120573066
XR_005641682.1 other downstream 43277 20827283 ~ 20863889 (-) False LOC120573300
TU195325 other downstream 1109636 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 1241374 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 1553874 19350510 ~ 19353292 (-) False LOC120572670
unassigned_transcript_712 other downstream 1841925 19065160 ~ 19065241 (-) True trnas-gcu_6
TU195934 other upstream 434423 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 452707 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 474296 21403855 ~ 21434195 (-) True G145209
TU196042 other upstream 955196 21884755 ~ 21890072 (-) False ccnb3
TU196043 other upstream 955196 21884755 ~ 21890072 (-) False ccnb3

Expression Profile