RNA id: XM_039822109.1


Basic Information

Item Value
RNA id XM_039822109.1
length 8032
RNA type mRNA
GC content 0.45
exon number 32
gene id si:dkey-172j4.3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 21351242 ~ 21438456 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCTTCTAGTACAATCCGTTCCGACGCTATGCGTATGACCGCGTCTCTCTCTGCAAGGCGAGCACCACCAGAGAGACCcgcacgctgctgctgctgctgctgaccgCGAGCACCTAAACGCCGGCTGACGAGCGACCCAGGCCGGGCAACAGGAGCGGGAGACGCCGCCGCTGATTAACCTCCGGCGGAGGAGAAGGTGGACGAAATTAACGTACGAAGAGTTGGCCCTGGATAGAGAGATCGGCAAGAGGACGAGTGTGGCGTCCCGGAGCCTGCTGTCCCATTCatcatcctctcctctcttcctcttcttagCCAAGCTTTTACCTCGCCAAACTCCACTCTTTCATCTCTTCTTTCCCTCTTTTATTCCTCCTACTCTGCAACTGGCAAACTTTTCATTCACACCTctgccttctctctttctctctgtcctttttccatcttccatctattcttccctctctcttcctttgcTTTTGACTGGGAGCTCGTCATGGCCTCTAAACTGAACCCCAACGTCCTGTATGTGGCGGAGCACGGCGAGTCTCTGGGCTCACCCCAAGCGGATTCTGAAAACACTCACATTACTGGAGAAGCTGGAGAAGAGTCATCAGACAGCGACGGGGAACAAGAAGAGACGTCGCACAAGTTGATCCGCAAAGTGTCTACCTCGGGACAGATAAGGGCCAAGAAAAGTGTGAAGGAGGGAATCCTGTTAAAGCAGACCAGTTCTTTCCAGAGATGGAAGAGGAGGTACTTCAAACTCAGAGGCAGGACCCTCTACTATGCCAAAGACTGCAAGTCTTTGATTTTTGATGAAGTGGACCTATCAGACGCCAGTGTGGCCGAGACCAGCACCAAGAACATCAACAACAGCTTCACACTGATCACGCCATTTCGCAAACTAATGTTATGTGCCGAGAGCAGGAAGGAAATGGAGGACTGGATCGGCGCTCTTAAATCCGTCCAGAAATGGGAAACCTATGAgGCCAGCCAGTTCAACATGGAGCATTTCTCTGGGATGCACAACTGGTACGCCTGCTCGCACGCCAGGCCGACCTTCTGCAACGTCTGCAGGGAGGCTCTGCCAGGCGTCACCTCCCACGGCCTGTCCTGTGAAGTTTGTAAATTCAAGGCTCATAAACGCTGTGCAGTTCGCTCCACCAACAACTGCAAATGGACCACACTGGCGTCCATAGGAAATGACATCATTGAGGATGAGGAAGGGgtgtttatgtccCACCAGTGGCTGGAAGGCAACCTGCCGGTCAGTGCCAAATGTGTGGTGTGTGACAAGAACTGTGGCAGCGTGCGGCGGCTGCAGGACTGGCGCTGCCTCTGGTGCAAAGCCATCgtcCACAACAGCTGTAAAGAACAAATGGGTAAGGTGTGTCCCTTGGGTCAATATCGAGTGTCAATCATCCCTCCCACTGCACTTAACAGCATCGACTCAGACGGCTTCTGGAAGGCCACCTCAGCGTCGTGCTCCAGTCCTCTCCTGGTCCTGGTCAACTCCAAAAGTGGAGATAACCAGGGAGTGAAGTTCCTCCGCAAATTCAAGCAGCTCCTCAACCCAGCTCAAGTCTTTGACCTGATGAATGGAGGACCAGAGCTCGGccTGCGCCTTTTCCAGAAGTTTGTGACGTTTCGTATCCTGGTGTGCGGAGGAGATGGCAGCGTGGGCTGGGTGCTCTCAGAGCTGGATAAACTCAACCTCCATAAACAGTGCCAGCTGGGCGTGTTGCCTCTGGGCACAGGTAACGACCTGGCTCGGGTTCTGGGCTGGGGAGGCCTCTGTGACGACGACGCTCAGCTGCTGCAGATCCTGGAGAAGCTGGAGAGAGCCACCACCAAAATGCTGGACCGATGGAGTGTGATGACGTACGAGGTGCCTGCCACCACTAAACGCACACCGATAGTGAAAGAAGACGACAGTCTTGATTCTCCTCTGCAGgtccACATCACTCAGTATGCAGACTCTGTGGCCTCCCACCTCGCCAAGATCCTGGACTCGGACAAACACAGTGACGTCATTTCCTCTGCCAAGTTTCTGTGTGGGACGGTGAATGATTTTGTGGCGGAGGTGGGGAAGGCGTACGAGAGAGCAACAGAGAACAAGGAGGAGGCAGATGCCATGGCAAAGAAGTGTGCATTGCTGAATGAGAAGCTTGATTCCCTCGTCAAGGCCTTAAGTGAGGAAGCAGAGGCTCAGGTGGTGCCAGCTGGTTCGGTGCCCAGCCAGGAGAGTGGCGGCTCAAGCCCTGTCGAAAGTGGCGGGGAGTCAGGTTCAGAGGGTAAAACATACCGGTCCAAGGAGCAGCTGATGCTCAGGGCCAACAGCCTGAAGAAAGCCCTGAGGCAGATCATCGAACAGGCCGAGAAAGTGGTGGATGAGCAGAACCAACACACGCAGGTCCAGAGAATGTCGTCCTCGACCTCCATCAAAAGAGAAAACAGCGAGGAGCTGAAGGATGCAGAGCCACGTCAAGGAAGCTTAAGTCCCACCTCCCCCATTGTCCTTGAGAAACCAGAGAGCCTCCACACTGTCACCTTCAGCGAGGACACTGTACAATGCTCAGAGAAGTGTGTGATGAACAACTACTTTGGCATCGGCCTGGACGCTAAGATTTCCCTCGAGTTCAACAACAAGAGAGATGAGCACCCTAAAAAATGCagCAGTCGCACCAAGAACATGATGTGGTATGGAGTGCTGGGGACGAAAGAGCTGGTCCAGAAGACGTACAAGAACCTTGAGCAGAGGGTTCAACTGGAGtgtGACGGTGTTCCCATGTCTCTGCCGAGTCTGCAGGGCTTGGCTGTGCTCAACATCCCCAGCTATGCAGGCGGTATCAACTTCTGGGGAGGCACCAAAGAGGATAATAACTTTGGCGCTCCGTCATTTGACGATAAGAAGTTGGAGGTGGTGGCGGTGTTTGGCAGCATGCAGATGGCCATGTCCAGAGTCATCAACCTGCAGCACCACCGCATTGCACAGTGCCGCCAGGTGAAGATCACCATCCTAGGGGAGGAGGGGGTCCCTGTGCAGGTGGACGGAGAGGCCTGGATCCAGCCGCCGGGCATCGTCAAGATCGTCCACAAGAACCGAGCGCAGATGCTCACCAGAGACAGGGCGTTTGAGAGCACACTGAAGTCATGGGAGGACAAGAGGAAGTTTGACAGCTACCGCGACAGCAGACCCCGCCTTAACTCCCAGCAGTCCATGGAGTACCTGACGGAGGAGGAGTGCGCTCAGGTTCAGCAGCTGGGCGTCGTGGCCGACACGCTTATCAACAAGATCCGTGAGGCAGCCAAGACTCACATGCTGGTGGAGCAAGAGTTAGCTCACGCCGTCAACGCCACCGCCCTGGTGCTCACAGAGGCCAAACTGTCCAGCCCTGAGTGTCTAAGTCGCAGCACGGCGGTGGAAATCGTCAACAGCAGTAAAGTTCTCCAGGCTGAGACTAGGATGCTGCTCGATGGAAAACTACTGTCTGATTctccagaggaagaggagctcCGGTCGACCCTTAACAGCCTCAGTGCCGAGCTCCACAAGCTGGACGACATCCACTGGATCTGTCCGCTCATGCAATGCTCCGAGGAGGACTCAATGAGGGGCAGCAAtaagagcagcagcagtataAAGCTGAAGCTCATACCCAAGgtgaagaaggagagagagaagctcCACAAGCAGAAGTCCAACAGCTCTCTCTCAGGAAATTGGGAAATCCGAGGTGGGACTGGTGAGGCAGACTCCTCGGGCAATTGAAGTCCTGCATGAGGTGCTTATTACCGACCCCCTCATTACCCTGACAGCCAGGGGTGAGGAGCACCCCTCctgttctcctctcctccaacCGTGATACCCAGTGGCCTGACAGAGGTGtgaggaagaaaaggaaaaccATCTTTCCAAAGTTTATGCTATTTCCTACCTGCTTCTTTGTCCTCCATTTTGCAGGGGGGATTTTTGTTCTATTTCTTGTTTTCTGTTGTTGAAGGGGCCTGGCTTTGCATTGCATTGCTTCACCACTGGCGTTCTGCTTTTGGTTCTGTTTACCCGCTTGAGTTTGGAAGTCGCCGTGGCCAGCAGCGAATCAAACAAAGGACAAGGGAGGCGTGGAACAAAAACGTTCttgcagatgtttattttattaatttttttttttttggacaaagaAATGTGTTTACTTGGTGCACTCCTTGCATGTCGAGTGCAGCCATATCATTTTATCATAAGTTGTTACACTCTTTTAATTCTTTTCTCTCTAACTTCAATCGTTTTATTTCTGAACTTATGAACAGCCTTTagactttgatttttttctccagACTTTTTGAGGAGTATTTATTTCTTGTTGCTACTGCCATGAGAACTCAAAGGGCAACAAAATGAACAAATCGAAATATCTCAACTTTATCGTCTACTGAACTTGAGAATATCTTAAATGTGCAAAAAATGTACTGAGGAATGTACTTGTGTGGACTTGTATTAACCTGTGAATAATGTTAAATGATAAATCATATAAGGTTTCACAAAGGTTCTACTGTGGTGGTTCTAAAGTGGTTCTTAATGGGCTGTTGTCTGACTTGTGTGATCCGAGGCTATGCTTTATGATGTGTCATTTCATCTGGAATTCAGCCTTATGAAAAGATCTGACTGAGGGATTAAAGTACGGACATCACTCAATTATCAAGGTCTAAAATTTGACTCGTGAGAGTCAAAAAAAAACTCATCCCACTGATTTTAAGAACCAATAGGAGGTACAGCACCAGATGAAATGACTCATTAAGTCTTTTTTGGCAGTGTATGGTGAAGGTGTTTACAGAAGGAGGAAGCATCAAGGACACATTaacaaaacattacagccactcagtATATTACTCCTACTTTGCCATACTACTGATTGTATATGTAATATAAGAATAAGGGTCAGTGGATATTTGGTTTTTGCCTCGTCTGTGAAAAGCTAttgttacattattattattgcaaatatattatctatttttttgtatatctTATTTTCCCAATGGTAACCTGTGAAACTGTCCTGGCTTTGCTGCTTCCCCCTTTGACAAACTCTTTGGCCAAAGTGCATATAATCAAAGTCAATTAATGCTGTTCTGTGTGTCcctgcatgcatgcatacttAGCCTTCCTTCGCCTCACAGTGTTAGGCAGCAGTTGCCTCAAAATAGTGAGTTGTAGCTTGTTTGTACCGACCAGCAGCATTTGtggatttttatttgttttaacttgcTTGACGCACCATTTAGTCTAGGTTGTACTGCGAGAGGATGTTTATTTAGCCAAAACACTTAAATGTCTGCCAATACTTTACGGTGTTGTCCAGACTTCAAGAGAGTGCATTGATTTACACCCACAGGGTTTTCCAAGCAGGTATAACAACAAGATTTCATATATCTTGAGTACGTGAAACAATTGTGGATTCATGTGCTGCTGTTAGGCAACTTCTACCAAGGTTTACATTAATGTTTTTGAAAGGAATGGTTTAGACATTTTAGAGGAAATTTGCTGTTACTGCTAAATAGATGGGAAAATGTATGTCTTCTTCATCTCTATGCAATCAGTAAAAAGATGGAAAGAGAAAGCTCCCAGATGTGCTTAACTTAGCTTAAAAAGGACAAAAGTCATGTGTTATTTACACATAGCTTATTAGCTAGCAAATTAGTTCCCAAAGTATGTTAGTTAACTGGGTTAAGTTAAGTGTTCAAAGCTTGCAACTCCTAGCAAATCCTGTCCTAGCAACAGCTAGGCTTAACTGTAGGTAGTCAACAAAGCTCCAATGTGTAATCCAATTAGTTAAACAGCATTTTCTTTTACTAAAGGTGTTAaatttacacatacagtaaataagagGAATACAGACATAACTCTGATAGCacttagctagctgtttcttcTGCTGTGTTTAGTCATAAGTGATGAAGCTAACTCCCTATTGACTGAACAGAGGTGAATTTTGACATTTCTTCTGCATTAATGTAAATTTCTTTAAATGTCTAGTATTACTACTAAGTTTTAATTGCCAGGatgtaataaagaaacactAGTCAATATTAAACATGAGTCAAATACTAGCTACAAATGTCCCATAGGTGGAGGTAACCATAGGAAAGTGATGATAGACCACTTGCCTAAAGTTGATTTGTTGTGATGCAACTCTACCACTttcaaaactacaaaaaaggGACATAACAATGTTTAGACACTTTGACTCGCGTCTAATCAAGGCAAACTAAGTGTTTTTTGAGATTTTACTCGGATATTACATCCACGAACAAGGCTGTAAACTGGTAATGCAtcatttctgttctttttttcaccAATAACGTAAAGGGTTAGTTCTTGATTTTCTcagttatttaaacatttttttatgaaaaataacCCAAACTAACTCCTGATAGGACAGAGTTACTGTGAGGCGTTGTAGATGTTCAGCTCTGGTAGAATTGTGCTACTGTATCCATAGTGTGCCAGCTATACGCTCTACACCTTAGAGGCTTAAGTGGTGTCGTGCCAAGTTTGTACTGAGTTCAGTGGGCTATGAGACATACaaggtgtgtgtgagagtgtgtgagctTCAGATGCAGAAGTTGTATGTCGTACATTTCAAAGTTTACTGTATCTTGCCTTGCACTTTACGAAGAAGCAAActtaatggggaaaaaaagacatttgtgtgcatgtgtgcgtgtgtgtgttgaagaTTTCAAGTGTTTacgagtgttgtttttttttaattgatttgtTGACAAATCTTTTATTTATGATAAATGTATACGGACAAAAGTGTGttgataaaatgtatatatctaACTAAACATAAAAGAATGATAAATGTATAGAGATGTATACACATGTTTATTACATCAGTGGTTGTACAATTACTCCCACAGCAGCTTGAGATCTCCCAATTAACGTCAATGTTATTACATGTGATTATGTGTCATTCCACTGCCATAGCAATGTCATTGAAATGTCTTTCCAATGTTACACCAATTGGTATTGAAATAGTATTCTCCAAATGTAACCAAGGTAAGGTTATTCTAACTTTAAGCCAAAGTTATTTGAATTCTCTAGTGTTATTACAGACTACTAATGAATCGATTAACACAAAAAGAGATGTCATATTCAGCCTATGTTTAACCAACATTTGGGTGAACTTTCTGTGTATAATTTAGAAAAttttaaaactgtaaaatcTATTGAGAAAATCTACTTTATGCTTTAATTTGCATTTGTTGTGCTAAAAACGAACACAAAGATGTGTCCAGTTACGGAACACACATTTGTGGAAGCTATTTCTGGGATAAGAATAACTAGTTGCCTATGTTTCATGGTCTTTTAACCAAGGATTTcatagtttttcttttaaagcataATTTTTTGGGTTATTTTGTATgagtgtcatttttttttcttcatatagcaaaaatgtcattttttactgaAACTCCTCGAAAGAGTTGCATGGAGCGGAGAAAATGAAATCAACCCACAGATTACAGATTACCCCCACCATGTTTGTGCAACAGTATTCCATGGACAACATTTGTGAACGCACCACCTGATCTGAACAGCCAAAATATTTAAGACTGCGCAGTGCTGGAAGCCAGACTAGATGTTGCACGACCTTGTACGTTGCGAggtgttttattgtgttatcgTGTGCAGTGTGTAACAAAGACAAAGTCAGCGCAACCGTTTGGACATTAAATGAATTATTGAAGTGTGAAGCTGGTGTCCTTTGGTGTTAatgtgttgatgatgatgagaaaATCCAGTTTCAGCGTACATTTAAACTCTTAAAGGTACGGTCACAATAAAACTTCCAAAATTGCCCCGACGCAATTTGAACAAACACTTGCAGGATGGAAATGTAAAGTGACCGTACCTTTTGTAAATTCGTTCCTACTTCCCTATTATCTATTGCACTTCAGTTTTGGTTTACCTTGCAAATGGAGAGAAAAGTAAAGGCCTTGCTTCAAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195863 lncRNA downstream 189766 21158902 ~ 21161476 (-) True G145141
TU195810 lncRNA downstream 250436 21100149 ~ 21100806 (-) False G145106
TU195809 lncRNA downstream 293443 21055824 ~ 21057799 (-) True G145106
TU195827 lncRNA downstream 373226 20976655 ~ 20978016 (-) True G145112
TU195755 lncRNA downstream 419521 20931066 ~ 20931721 (-) True G145076
TU195944 lncRNA upstream 36927 21475383 ~ 21479973 (-) True G145213
TU196111 lncRNA upstream 603970 22042426 ~ 22042693 (-) True G145330
TU196108 lncRNA upstream 640678 22079134 ~ 22079491 (-) True G145327
TU196105 lncRNA upstream 709122 22147578 ~ 22153086 (-) True G145325
TU196115 lncRNA upstream 716954 22155410 ~ 22155707 (-) True G145334
XM_039822776.1 mRNA downstream 166785 21167499 ~ 21184457 (-) True rab39bb
XM_039821863.1 mRNA downstream 218692 21131568 ~ 21132550 (-) True LOC120572532
XM_039821423.1 mRNA downstream 224173 21120201 ~ 21127069 (-) True LOC120572218
XM_039822498.1 mRNA downstream 281160 21065168 ~ 21070082 (-) True LOC120573066
XM_039822497.1 mRNA downstream 300954 21045556 ~ 21050288 (-) True LOC120573065
XM_039822963.1 mRNA upstream 50176 21488632 ~ 21534404 (-) True zgc:109889
XM_039823360.1 mRNA upstream 98691 21537147 ~ 21683352 (-) False htr2cl1
XM_039823359.1 mRNA upstream 98691 21537147 ~ 21683352 (-) False htr2cl1
XM_039823361.1 mRNA upstream 98691 21537147 ~ 21683352 (-) False htr2cl1
XM_039823358.1 mRNA upstream 98691 21537147 ~ 21683352 (-) True htr2cl1
TU195751 other downstream 434067 20915641 ~ 20917175 (-) False LOC120573168
XR_005641682.1 other downstream 487353 20827283 ~ 20863889 (-) False LOC120573300
TU195325 other downstream 1553712 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 1685450 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 1997950 19350510 ~ 19353292 (-) False LOC120572670
TU196042 other upstream 446299 21884755 ~ 21890072 (-) False ccnb3
TU196043 other upstream 446299 21884755 ~ 21890072 (-) False ccnb3
TU196044 other upstream 446299 21884755 ~ 21890072 (-) False ccnb3
TU196045 other upstream 446299 21884755 ~ 21979426 (-) True ccnb3
TU196109 other upstream 656451 22094907 ~ 22126460 (-) False shroom4

Expression Profile