RNA id: TU196045


Basic Information

Item Value
RNA id TU196045
length 5455
RNA type TUCP
GC content 0.43
exon number 7
gene id ccnb3
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 21881290 ~ 21979426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataGCAACCATGTGCTACACATGTTCACAGCTACAAAACTGTTGAGTACAAACACGCCTCAGACACATTCAATGTAAATGTTTTCCCCGCTGGCCCAAAGATTTGTGTAAGTTGCATTATCACCGGCGCTGGACCTGTTTGAGTGATCTGTTTGTGTTGGTCGGAGTGCAAGAAAGAAAAGGCCGTATGATTGTTGGAAGTTTAAACTGGAAAATAAACTGACTTTGGTCCAAGTTTACAGAGGGAGGGCAAGCTTGGTATGTGTGATGTGATGGAGTGTCGGCGGGCTGAGAGAAAGCCCAACAGAAACGTGACcaggtgccaaaaaaaaaaagaacagttgAAACAGCAATCAAACTAAATTAAATTTGCCTTCAATTATCTGCTTTGCACAGAAAAATAAACCGgaagtgttgttgtgttttcataGCTTCACTATCAAACCTACAGTATAACGTAACCTTGCATAGAGTATATACACAGGTATGTGTGAACCACAGTGCCGGAAGGATGTCGCCTTATTAAAAGTGTgcgtcagagtgtgtgtgagtgtataaaACCTTTTCTCTCAGGGAAAACAAATAGTagatacacaaacaaagaaatgtgtttACGTTAGTTTGACCTCGTTTTATGAATTATCCATGTGAACTGAGCCCTTTGAAGAAACAtaactacatacacacacacaccatgcatgCCGCCAACTGATCACTGACAACTACCAGATGGCACAGTGAGGCAAGATGGTGTGGATAAATGACTGGTTTTGTGTCTTTACAATGTGACGCTggatgatgtgtgtgtctgcggaGCACAGCCTGGATATGGTGCGAGGTGATGtttgtatctatgtgtgtgccAGAGATAAAAGTGTGCAGGGGTGGAGTCTGTGCGAGTCGGTGCATGGTTTATCTGTGAATATTTTCTCTCGCTCCTTCCAAATCTGTCTTTATGCAAGTCTGTGTCTTGTTACTGAATCTGCTTTGTATTTTCCTAAAATTCACCTTTTCTGTCTTCACCTGCTGAACAGTTTTCCAGAGGGAATTCTTTGGTGTGTTTCTAACTCAGAACTGCACAAAATGTTTGCATATGATTTTATTTATGTGTCAGTGTGTCCAGGTGACTGGCAGCCAATTCATCTGCTGGTGTGTCTGAAAGTACAACTTGACCATGATTTTAACTAAGAAAAGTTTCAGCACTAGTACACCAaattacttttgttttcttgttagCAACTAACTCTTATCCGGTTAACTAACTATTACTATAATGTTAAAACACATCTGATTGGCACATAATAAGTGAATGGTCGTAAATTAAAGCAATAGTTCGACATTACGCTTCTTTGATGTCTTGCTAAGAATTAGATGagtttgataccactctcataactatctggtaaatatgaagctgcagccaggaggcagttagcttagcttagcacagcgtGTTGAAACAAGGAGAAACGGCTAGAGTGGCTAGTGAAAAAATCCTCCTTTGcctctgcttccagtctttgtgctaagctaagataagaTGATAGCTAATGGGATCCGAGATTGGATTTCGGCCAATGCTTTCCGTCTCTTTTGCTCTCCACACAGACGGTCAAAACTACTCAGACTACAAAGGTAAACCAGAACCGTTCCGATAACAAAATCTTGTCCCGTCGCCTCCAGattctgcattcatatgcagatatcAGTTTATATAGatcagtctcgcattgccagaccttcctccacagcgctgcagaggagggtctggcgagtccacacatacagtatataagaatggaccaacagatcccgttgctctggacggagacccatggaggatattagaagcacttttccagtgagcgctgagcgttactgcgcagcctccaactgagagagacaacataaatgtgacgtgagcaacctgtctgaaagttgtaagtcttctggtagctgtgccaagagaaatctcaatcattccccatcttgcagagacggagaacgtaggtatatgtaaggagataacatgggcacagactaattattgatcactaacatgctagttaacattagtaattaaacttaaacagctaatgtaagtcgaaactgcctgcgagcttctcctgtactatacggtaattcctctactatacgacagtaagtcgcttggttatgacacaatcgttagcctattttgataaaaaacgtctgctacggagccataacgtgaggtacaaggtaatggagccttttatacattgtcgtgtttctttagaaataaacaatggacaaatagagtctttaaacgcttcagatgtaaagttattctctgtcaaagttgacgtcaaaatgaatggcagtcaatgggatgctaacgggaggtgatattgttctagcatcaaaatggcgccgtaggaggtttgagttctgaagcgaagcttacccccttgagtccacacagcattccgggatgggagaaaaacgtgctctggtttattggcatttctttaaaccaatcacaatcgtcttgggcggtgctaagcaccgtaTGGGGAACAAAGGTGTtcctgcaaaatagcctcgggaaggaacttgttttgatggaacgtgtgtacgttcaaaagttgttttagtcgtgcaacagaaaactcaggttggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcacaaatccaccagagtttaaaattacaacgcAAAGAACGCAGAAGGTAACGgccatccggcctaaatgagtgaaatccggcggaatttccgtcggcaacggagcaatcagAAGTGTAACGTCGTGAAATAGACTAATATAAAATACCGTAGATTAACTGTCTCCTGCTTGTAACAGTTATGAGAGTGGTATGGAACTCATCTAACTCTTAGCAAGACAGACAAAAgcttcaaaatgtcaaactatttctctAATGTTAATCAGTGCTAAAGTGATGTAAGTCTGGTTCAATTTCAGGCCATTCTCTCTTATTATCcagatgttattttttttacagtccatTCTCCAGTGGACCTTTTTATATCATGAGTGGCAACTTTCCTTATTTGGTCTGTGATGACACTCCAAAGCAACAGTTTTTTTGATTTGCAGGACTAAAGGTGTCTTGGTTAAGACTGGGCTAAATTTGGTGCAAAAGTAAAAATAGTTTCAGACAGATCTAGgagtttaaataacaaatcagtGAGTCTTTGTTACAATTGCTAAACCTCTTTTCTCTTGATCTGAAAAGCACCTAAACCATgcctctgtgttttgtgtttgtgcgaCTAGCCTGTtggcatgtgtgtctgtggttggtGGATTCACTAATgcttaaaataaaactgaatgcAGCTTCACAGGGTagacaagatatttaaaattctttacaagaaaggaaaaagagattGCGAGGGAGTCATCAACAACACAGACTGGTTGGGTTGCATACcagcctctttctctctttccttttatcTTCTTCTGCATGAGCTCATTCTTATTGGCCTTTTACAAGATTTctgcctcttcctctctgttttcATTCCTCCTCGCAAAAGGCACTATATGTTGCTCACAGTCTCACAGTCTTATTACTGTATCCAGTACAAAGAAACAATCCTTATCATCCTAAAAATGTCTTTGCATAAAATCCACAGATCTAGTGTTGTAAATAGTCCTCAGCAAACTCCAAGTGGTTTTAAGTCCAGTCAAGGTAAAATACAtatgaataatttttttaaatcaccacgGTTCAATGTCTAAATCTCATTCTCAGCCATTCATATGTACAGTACTCTCATGGCAcgcttaaaaagaaaaagaaaagtttattCCACAAATTTCTTTTGCTTTGGTTTGATCATTTGACTTTCTTCTGCTACCATTCCACAGTCCTTCCTCACATCTCGGATGCAAAGGATTTGAGTTTTTATCGTCTACATTCTTCGGTCTTGAATCCAAATCCAAGGGGTCCCATTGCTTCCCACAAAAAGGCTACTGTCGTTCGAAATATACTGAGATTCATGTGGTATTTGTGGGTGCAGGGTGGCCTAATTCCATGGGTAAGTCTCATCTGACAGGaaggttttaaatgtttttctgtgGTTAACTTCGTTTTTTGACATCCAAAAGGCAATTTGCTATTCCCAAGAATCAACAGAAAATCGATATCCTCACATTTATTTTTCGCTTGATTGCACGTGTGTCTTTGTACATCTTGCTCTCGGCGGTTAAGTTTGTGCTTAACGGAGAGTAAGGAAAACTTTCTTTTCCCTTTCACTCAGGCGAAGCCTTGAAACCCCAATCCTTCCATCCTTCAGTGTATCCATCCAAGCAAACTTTGAGGATCCAAGATCCAGGCCAACATCCTACAGCTCTGCCTAAATGacaatttttttctttcaatcaaCGGATATTCAGATGGCCCCTAACTCATTGTCTCCAGCCCACCCATTTATTCAtctgttcttttctttcttcctccatCCTTTCCTCTCAGAGGTCCAGGCGGAAGGCGCCAAAGTAGCTGGAGGAGTCGTCCGCGTTGACCATGGTCGGGGACGAGACGGAGACGAAGAGCTCGTCGCCGGCCCTCAGCTCAAACAGTCCTCCCTGGTAGACGGAGTGCAGGGCGTACTCGGCGTCTGGAGCCCAGCACTTTGTCCCCACCCCCTTCAGGAGCTGAGGTGAAAATGAAGGTCAAAATGATGAAAAGATGGTTcacaagaggaagaagaggatagAGATAAAtggccgaggaggaggagatgataCGGATAAGCAGATCAAAGTGCAGCCGCTGCAGAGTTTGTTTGCAGAGGATAAAGGAGCCAGCCATGCCCTTCACTAGGGGAAAGAAGCCCGCTCTCGCCGCTGGGAGCAAGATACCCAAGCTTAATGCAACAACGAGTGAGAACCAGGAGGAAGGCCCACAGGTGAAGAggtcctcctcccctcctcatGGAGCCCCGAAGAAGAGGACTGCTTTTATCGACATCACTAATGCTGTCGGTCAGTGTCTGTCAGAGTGTCGGCCCAACAGCGATGGCAGCTTCAGGACAGCTCATAAGGTTCAGATCAGCCTTCCAGGGAGGAAGAAGGAAGCGGGCAAGAAGCAGGTGAAGAAAACGAGCGCCCCCTCGGTGTCGGCGAAGAATCATGCCAACCTGACAAAgTCTTTGTCGGTGAGCTCAGACGGCTCGCCCAATGAGAAAGAAAAGGCCGATTCAGAGGAGGGGAATgaagaggaggtgcagaaggCTGTAGCGGCTCCAGTAGAAGAGCTGGTTGCTGCTGCGCACCCTGCTGCCCGGGAAGTGCCAGCACACCTTCAGAAACAACCAGTAAGGGAAATTCAAAAGGAGCTTCTGACCTGTACAAATGTTGTAGAAAGGTTTGTCGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195944 lncRNA downstream 404782 21475383 ~ 21479973 (-) True G145213
TU195936 lncRNA downstream 446895 21431725 ~ 21437860 (-) False si:dkey-172j4.3
TU195863 lncRNA downstream 723279 21158902 ~ 21161476 (-) True G145141
TU195810 lncRNA downstream 783949 21100149 ~ 21100806 (-) False G145106
TU195809 lncRNA downstream 826956 21055824 ~ 21057799 (-) True G145106
TU196111 lncRNA upstream 63000 22042426 ~ 22042693 (-) True G145330
TU196108 lncRNA upstream 99708 22079134 ~ 22079491 (-) True G145327
TU196105 lncRNA upstream 168152 22147578 ~ 22153086 (-) True G145325
TU196115 lncRNA upstream 175984 22155410 ~ 22155707 (-) True G145334
TU196126 lncRNA upstream 222155 22201581 ~ 22201943 (-) True G145337
XM_039823360.1 mRNA downstream 201403 21537147 ~ 21683352 (-) False htr2cl1
XM_039823359.1 mRNA downstream 201403 21537147 ~ 21683352 (-) False htr2cl1
XM_039823361.1 mRNA downstream 201403 21537147 ~ 21683352 (-) False htr2cl1
XM_039823358.1 mRNA downstream 201403 21537147 ~ 21683352 (-) True htr2cl1
XM_039822963.1 mRNA downstream 350351 21488632 ~ 21534404 (-) True zgc:109889
XM_039822510.1 mRNA upstream 21169 22000595 ~ 22039565 (-) False clcn5b
XM_039822509.1 mRNA upstream 21169 22000595 ~ 22039062 (-) True clcn5b
XM_039822511.1 mRNA upstream 21169 22000595 ~ 22026354 (-) False clcn5b
XM_039821773.1 mRNA upstream 66075 22045501 ~ 22126481 (-) True shroom4
XM_039822662.1 mRNA upstream 184809 22164235 ~ 22200049 (-) False phka1a
TU195937 other downstream 450560 21403855 ~ 21434195 (-) True G145209
TU195935 other downstream 491272 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195934 other downstream 517109 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195751 other downstream 967580 20915641 ~ 20917175 (-) False LOC120573168
XR_005641682.1 other downstream 1020866 20827283 ~ 20863889 (-) False LOC120573300
TU196109 other upstream 115481 22094907 ~ 22126460 (-) False shroom4
TU196131 other upstream 250633 22230059 ~ 22230502 (-) True G145342
TU196331 other upstream 835480 22814906 ~ 22817623 (-) True G145509
XR_005641480.1 other upstream 2075574 24055000 ~ 24075036 (-) False LOC120572715
XR_005641478.1 other upstream 2075574 24055000 ~ 24075036 (-) False LOC120572715

Expression Profile