RNA id: TU197110


Basic Information

Item Value
RNA id TU197110
length 1560
RNA type TUCP
GC content 0.37
exon number 3
gene id G146055
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 25314851 ~ 25516408 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTGTTATATGACTGCTGTTAAAACCATCTGATGTGAGACAGATATTTACAGGTTTATTTAGTCTCAGTTCTACATTTGCTGAATTGGtataaatgtgttttatgagcTGGTCCAACACTACTGAGTTGATGCACCTGATATCAGATACAaactctggttttctgtcttcatGAAGCTGCAGAACACACACCAGGAGGCCCAAAAGTCAGATCACATCATTGGAACAAAGTTACAACTTCTCTCAGAGCTGCAAAGTTCTCATAGTCACTGCTGTGATATTTCTAGTAGATGCAGCTGTAAGATTTCCAGCAGCAATGTTTCTATATTACGTTCTGTTTGTGTCGTTGCTTTGTTTGCTCTTCCTTTAGTCTCATGTCTCCTCCAGCAGAACAAGTCTGGTATATGTGCTGACAGGGTGATTGGGAAATGAGACCCAGGTGATCAGGATGAGGAGAGTCTGAGGACACCTGGTGGACAGGTGGACAATCTTCTTATTCTTCTGCTAAACATTACTGAAGCACTTGTTCTTGAACATAAAAAGTAACGTAAAGTACGTATATCACAGTCAGCAAAGAACATTTaaattaataacatttaaataactttATTCTCTTCCGGAAATTTTGGACTCTTCAAGTTTAATATCTTATTGAAATGAAGTAATGAAATACaaaggaaacattttttttgggaCAAATTAATGAATGAGATGAAACATCAGATCAAACATTTAAAACCTGTCAGATAAAATCAGAGCAGAAGATCTTTGTGATCATCAGTTCATTTAAATATCCTGATGGTCTCAGTGATCACAGCTGgaacatgcagacagacagacagacagacagacagctggaacctgcagacagacagacagacagctggaacctgcagacagacagacagacagacagacagacagacagacagacagacagacagctggaacctgcagacagacagacagctggaaCCTacagacagacagacagacagacagacagacagacagacagacagacagacagctggaacctgcagacagacagctctcccagcatgcattgccATTTACAGCATGATCCTGCAAGcaccttttttaataaattgatTAGCTATTGACAGAAAGTGGAAATATATAGCCACGTCTACAAGTTCCCTTCTTGACCTGATCAATGTTTTTGAGAACAATATACTTTTAACTCaattcaaataataaataactagttaacactacaatAGCTGCGCCTCTGCAAAAATAGAAATAGACTTTATGCTTTGAATGCAtatgaatcagaatcagataCAGGTTTTGTCTTTGCCTTGGTgaaaggtgcatacataaacaaacatattaaacattaataccaaacacaataaatatataaaaaacaaaatacatacatatgaaGTAACGGttgcatgagaaaaaaaaaaacttaagtaACATTAAGATTGGGGGCAATTGTAACACTGACTTTTTCCATTCAATGTATTATAGTCATGTCCTTATTACTCTaaatgatgccatgttgctaaATGTATTAATTGTATCCT

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197093 lncRNA downstream 28070 25206424 ~ 25286781 (-) True G146044
TU197060 lncRNA downstream 181824 25082359 ~ 25133027 (-) False G146022
TU197059 lncRNA downstream 230759 25082359 ~ 25084092 (-) True G146022
TU197013 lncRNA downstream 313537 24995494 ~ 25001314 (-) True G145983
TU196978 lncRNA downstream 494802 24727481 ~ 24820049 (-) True G145964
XR_005641379.1 lncRNA upstream 25333 25541741 ~ 25547026 (-) False LOC120572174
TU197205 lncRNA upstream 98255 25614663 ~ 25616566 (-) True G146111
TU197281 lncRNA upstream 153394 25669802 ~ 25671820 (-) True G146172
TU197292 lncRNA upstream 187751 25704159 ~ 25704621 (-) True G146178
TU197293 lncRNA upstream 188417 25704825 ~ 25705357 (-) True G146179
XM_039822551.1 mRNA downstream 198268 25114694 ~ 25116583 (-) True LOC120573101
XM_039822592.1 mRNA downstream 263326 25045274 ~ 25051525 (-) True LOC120573116
XM_039822584.1 mRNA downstream 279184 25031421 ~ 25035667 (-) False LOC120573110
XM_039821341.1 mRNA upstream 7926 25524334 ~ 25539488 (-) True LOC120572167
XM_039821322.1 mRNA upstream 31635 25548043 ~ 25579123 (-) True LOC120572157
XM_039821340.1 mRNA upstream 109261 25625669 ~ 25637143 (-) False LOC120572166
XM_039821339.1 mRNA upstream 109261 25625669 ~ 25637143 (-) True LOC120572166
XM_039821337.1 mRNA upstream 125931 25642339 ~ 25644506 (-) True LOC120572164
TU197058 other downstream 241908 25072460 ~ 25072943 (-) True G146021
TU197011 other downstream 300086 25009014 ~ 25014765 (-) True G145982
TU197015 other downstream 322599 24990208 ~ 24992252 (-) False G145983
TU197042 other downstream 333899 24980247 ~ 24980952 (-) True G146008
TU196751 other downstream 1001434 24308354 ~ 24313417 (-) True G145810
TU197185 other upstream 24670 25541078 ~ 25546945 (-) True LOC120572174
TU197186 other upstream 26506 25542914 ~ 25546945 (-) False LOC120572174
TU197399 other upstream 448219 25964627 ~ 25968276 (-) False G146256
TU197400 other upstream 448219 25964627 ~ 25974022 (-) False G146256
TU197441 other upstream 451118 25967526 ~ 25990471 (-) True G146278

Expression Profile