RNA id: TCONS_00006808


Basic Information

Item Value
RNA id TCONS_00006808
length 3637
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_003472
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25403561 ~ 25408636 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGGCTGGTATCTGGAACAGCCTCGACGAGGGAAAAAAAGTCTCTTCTTTGCCCTGTATCCCATCCGAATTCACATAACTTCCCGTCTAAACCGCGCAAATCGTGAATAGGTTCATGGGCTCGACAGAAACCGCCCGGTGGTTTGTGTGAATCCAGCTGAAGGCACATGGTGCGGATTCTCAGGATGAGTTGCCGAAATCCACCGGCGGCGGCAGCGGCGCGAAAGACTGCAGCATCTGCCCGGGCCGAATAAACCACAATTTATCTCAGTCATCTCGTCTTTAACTTTAATTTGAGCCGAAAACCAAGCCCTTCAAGGGAATTCCATGCGAGACCGCGAAGAAAAGCAGAAGAGATGTTTCAGCTTCCAGTGAATAACCTCACCCGGTTGAGGAAGGCCAGGAAGAAAGTCAAGAGACTGCTGAGTGACATTGGCCTTGACTACTGCAAAGAGCATGTGGAGGACTACAAAGACGTAGACCCCGATGATTCTGATGACTCGAATGAGTCTCACCTTGACCTTTGTACATGGGATCCAACTTGGACAAAGTCTCAGGACTACAGAACAAAGCAGTTTTGCTGCTCAGATTGCCCGTTTGCCTCCAAATATTTTTCAGCCTACAAAAACCACTTCCGCAATGTTCACAGGGAAGATTTTGAAAGCAGAATACTTCTTAACTGCTCCTATTGCACATACAGTGGGAACAAGAGGACTCTGGAAACCCACGTCAGGCTCTTCCATATGCCTCACAATGTGATGCGTCAGGGTGTCGTTGGCCCTCATGGAGCTCCAGTAGGGGCTAAAGATGGCATGCGGGTGGACAAACCCATGCTGGGTGATCGAAAGGAGCTCCCGGTGTACTACTGCAAGAAGTGCACCTATCGAGATAGACTGTACAACGTGGTGCGCCGGCACATCTACAGGGAACACTTCCAGCACGTGGCAACACCTTACCTGGGAAAAAACTCAGAGAAGCAAGTAAACAGTGGAGAGGCCCAAGCCAACAGTCATGGGATTCACTGCAAGAGCTGCCACTTTACACCTCGTTCTTATGAAGCACTGGTGCAGCACGTCATTGAATTCCATGAGCGCATTGGCCATCAAGTCACTGCTATGATCGGGCACACAAATGTCATAGTGCCGAGGCTCCAGACGAATCCAATCCAAAGGGGTGTTCCTATCACTTCTGGCGTGCGTCCACAAACACCTCAAATGAATCGCTTCAGTATGCCCAAAGTGGTGGGGTTACCTGTTGGAAACCATTTTAAGCAAAGCCTTGCTGGCAACTCTGTGCCTGGTCAGCCAGTGCGCGTTACACTACCTGATAAAGCTTTTGTGTCTAGTGcagtctctcattcacactctgGAAAACACCTGGGCGGCTTTGGAGTCCATGGTGCTGCACATCTTAATGCTCAGTCAGCTTCTTTCTCCCCCTCACTGAAGAGTCTACCTCTTTCTTCATCAGTGCATGCTGCTACTGCCACATTGACATCACTGCAGGCCAAGAAAGCTTCAGCCAATGCTCTGAACACCTCACAAACACAAAAGTGGAAGATCTGTACCATCTGCAATGAACTATTCCCCGAAAGTGCATATAGTGCTCACTTTGAAAAGGAACATCAGGCAGAGAAGGTGAGGGCGATGGCTAAATACATCATGAAGATACACAATTTCACAAGCAAGTGTCTGTACTGTAACCGTTACCTTCCAAGTGACTCTTTGTTGAACCATATGCTAGTGCATGGGCTATCATGCCCACATTGTCATTCCACATTTCATGAGGTTGAGAAAATTGTAGCACACAATCGCCTGGCGCACCCCAATGAGCAAGGGGATCAGCCAACTGGTTCTCCTCTAACATTCGATCTCACACTTCAGCAAGGAAATCTCAAAAATGTCCAGCTTTTAGTAACCACCTACAATATGAAGGAGACACCTGAAGCTGCCGCTGCTGCCGCAGCTGCCAATCAACTGTCACAAAACAGCGCCATGCCCAAACCTGTGAAGGTGTCTGTAAGACAGCCGGATACCCAAAGCGATTCATTGGTGCGAAACATGTCACAGTCACCGGTGTCACAAAAGAAAGAGGTTGGAAAAACACTCTGCCCACTGTGCTTCACTATTCTAAAAGGGCCCATCTCAGATGCCCTTGCCCATCATTTACGCGATAGTCACCAGGTTCTCCAAACTTTGCACCCTGTAGAGAAAAAGTTAACCTACAAGTGCATCCACTGCCTGGGTGTGTACACAAGCAACATGACAGCTTCCACCATTACTCTCCATTTGGTGCACTGCCGGGGTGTTTGCCAGACTCCCAAAGGCTCCAAGCCCATCACGACTGGGCTGCGGTCCCCTGGAGCTGGGTCTCTGAAGCGCGAGTTAGTTACCCCTGATCCATCTGACCCAAAGAGAAGAAAGATGGTAGACCAGTCTAGGTTTTACCCTACAGGCTTCGCTGAGAAGCCAGAAGAGCCAATCGTGTTGGCCTTGGATCCAAAAGGTTATGGTGACAAATCCTACGAAGTGCGTAAAGCTTTCCTCACCGCATATTTCAATCGACATCCCTACCCCTCCCAACGGGAGGTTGAGAAACTTGCTGCAAGCCTCTGGTTGTGGAAGTCTGATGTTGCAAGCCATTTTGGCAACCATCGCCGCTTATGTGACCGGGACTTTACCTCCCGCAAACCAGTGGTGTTACTGGGCTTTAACATGCGGTTGTTGAGCCAAATCAAGCATGACATGAGCTTTGATGACAGCTGTCTGTTTGAAGTCTTTGATGATGAAAAAAGTGGATACTCAAGGACCTCATCGTTTAGGCTCAAGTCTCCCATTGGTTTCCCAGCAGACTTCATAGGGTCAAAGCAGCCATTAAACACTGGACAAAGTAGTCAAAGCAACTGTGCCTTCAAGACATGCCCTGGATCCTCCTCAGAACCCATTGCCATCGACTCTGACAGTGATTCAGAGTTGGAAGTTATACCTAATGAAAATGTCAGTCAACATACTCCAGCGTTAAGGCCTTCGATAGTTCAGTCCCAGACAAAAGGGGCATTGCTACGAGAGAGCTTACGTTGTGAAAGGGATGTCAGGGCGAACAGAAGTTCTCCCAGAGTTGGGCCAAAAGTTCTAGATGGCTCTGTTTCTAGTTCCAGTCCTGACGAAGCAACTTGGTCAGGTAATATGTCTTCTGAAGAGAGCCACTACATACCTGCGGGACGATTCGAAGTAAAGGGGAAGAAAGTGGGGTTGCTTGGTAGATGATGGCTTGTGGCGATTCTCTCCTTTCTCTTTAACTCTCCATGCTCAGATTAGTAGGTCAGACCTTTTACCTCACCTTTGGCTGACATTTGAACATTATTACATGAACTGAGTAAAAAAAGCCAGAGGAGTTACACCCTTACTGAAAGTACTGTTTACTCTCAGACACTTCTGCTGTCCAAGAGCAGAAAAACTAATATACTGTATCTCTTTTTTTCCAATTGATCCATAGTCcatggtgttttttttctttcttcttttttgtatACTGTTCTCTGTATTTAATCATTCACTTGTTGGAATTGTAACAGAATTGATAggtctattgttttttttcttgattcAAATAAAAAGACAGTGTAATTTACCATTAA

Function

GO:

id name namespace
GO:0043249 erythrocyte maturation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-112 Predicted to enable DNA binding activity and metal ion binding activity. Acts upstream of or within erythrocyte maturation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Helsmoortel-Van Der Aa Syndrome. Orthologous to human ADNP (activity dependent neuroprotector homeobox).

Ensembl:

ensembl_id ENSDART00000089120

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008402 lncRNA upstream 144564 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA upstream 144564 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00008613 lncRNA upstream 175366 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00006816 lncRNA downstream 72471 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 72479 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 139218 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 420734 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 779881 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00006806 mRNA upstream 6432 25388747 ~ 25397129 (+) False XLOC_003471
TCONS_00006807 mRNA upstream 7684 25388793 ~ 25395877 (+) True XLOC_003471
TCONS_00006805 mRNA upstream 66640 25328202 ~ 25336921 (+) True XLOC_003470
TCONS_00006804 mRNA upstream 72236 25328199 ~ 25331325 (+) False XLOC_003470
TCONS_00006801 mRNA upstream 91884 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006809 mRNA downstream 22215 25430851 ~ 25435597 (+) False XLOC_003473
TCONS_00006810 mRNA downstream 22215 25430851 ~ 25435922 (+) True XLOC_003473
TCONS_00006811 mRNA downstream 51061 25459697 ~ 25475274 (+) False XLOC_003474
TCONS_00006812 mRNA downstream 64122 25472758 ~ 25475403 (+) True XLOC_003474
TCONS_00006813 mRNA downstream 69007 25477643 ~ 25480037 (+) False XLOC_003475
TCONS_00006802 other upstream 101004 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 275699 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 362924 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 372315 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 377969 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006814 other downstream 69107 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 72471 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 669311 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1195975 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 2111820 27520456 ~ 27520573 (+) True XLOC_003503

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03062452_03066451.mRNA True 3198 mRNA 0.48 4 CI01000306 3062452 ~ 3066656 (+)