RNA id: TU201612


Basic Information

Item Value
RNA id TU201612
length 512
RNA type TUCP
GC content 0.55
exon number 6
gene id G149095
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35136144 ~ 35142486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTTGTCGGAGCTCGTCGGGACGGAGAGACACACGAAGGAGCAGAGACACAATCACTCGCCATGACGACAACTGAATACCACGACATCGAAGATGACAGCAGCTCCTTCTGGAACAAagAGCctgcatctgtctctctctcagctgtctCCAGGTTCAGACGCTGGTTGTTTCCTGCTCTGACAGCTACATTCATCCTGGTTCTGATCATAGCACTGGGAGCTagcaacacTAGGACCTCTAACCGACTCTGGTCTGTGGAGAACAGTGTTTCCAACCTGACAGGATCTCTGAGCGCGGCCCAGCAGCTCACCAAAGACGCAGCCAAAGACGTTCACCGCCTCAAGTTCTCTGTGGAGAGCAACAAGGAACAGCTGAGCTCAGtggcCGAGGCGTTGAAGCAGCTGGCAGTCGTCGACTCTCTCAGCCGGACGGTCGCTTCACTCAAATGTTCCCTCGAACGGATCATCAgaaacacCACAGTAGTGGAGGGCTGTTGTCCTCTGGacggg

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201618 lncRNA upstream 86929 35045935 ~ 35049215 (+) True G149100
XR_005641591.1 lncRNA upstream 98205 35032776 ~ 35037939 (+) True LOC120573017
TU201259 lncRNA upstream 238613 34813949 ~ 34897531 (+) True LOC120572627
TU201263 lncRNA upstream 244524 34820778 ~ 34891620 (+) True G148822
TU201247 lncRNA upstream 404550 34728439 ~ 34731594 (+) True G148807
TU201647 lncRNA downstream 100 35142586 ~ 35147096 (+) False G149126
TU201648 lncRNA downstream 100 35142586 ~ 35147864 (+) False G149126
TU201649 lncRNA downstream 100 35142586 ~ 35147096 (+) True G149126
TU201650 lncRNA downstream 8181 35150667 ~ 35154004 (+) True G149127
TU201651 lncRNA downstream 9624 35152110 ~ 35503528 (+) True G149128
XM_039822467.1 mRNA upstream 3035 35130259 ~ 35133109 (+) True LOC120572935
XM_039821952.1 mRNA upstream 18371 35112479 ~ 35117773 (+) True LOC120572631
XM_039822304.1 mRNA upstream 48049 35073131 ~ 35088095 (+) True LOC120572831
XM_039822305.1 mRNA upstream 48049 35073131 ~ 35088095 (+) False LOC120572831
XM_039822326.1 mRNA upstream 70959 35058176 ~ 35065185 (+) True LOC120572841
XM_039822481.1 mRNA downstream 68836 35211322 ~ 35212437 (+) True LOC120572947
XM_039822224.1 mRNA downstream 83260 35225746 ~ 35249690 (+) True LOC120572786
XM_039822225.1 mRNA downstream 83265 35225751 ~ 35249690 (+) False LOC120572786
XM_039822231.1 mRNA downstream 119666 35262152 ~ 35315419 (+) False LOC120572790
XM_039822230.1 mRNA downstream 119667 35262153 ~ 35315419 (+) True LOC120572790
TU201613 other upstream 7941 35122722 ~ 35128203 (+) True G149096
TU201621 other upstream 49195 35073121 ~ 35086949 (+) False LOC120572831
XR_005641491.1 other upstream 168712 34953780 ~ 34967432 (+) False LOC120572767
TU201115 other upstream 322297 34808072 ~ 34813847 (+) False LOC120572627
TU201116 other upstream 335636 34775541 ~ 34800508 (+) True G148730
TU201639 other downstream 119737 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other downstream 119812 35262298 ~ 35285555 (+) False LOC120572790
TU201707 other downstream 283763 35426249 ~ 35429043 (+) False G149172
TU201726 other downstream 645633 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other downstream 974812 36117298 ~ 36122718 (+) False LOC120572849

Expression Profile