RNA id: XM_039822231.1


Basic Information

Item Value
RNA id XM_039822231.1
length 2257
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120572790
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35262152 ~ 35315419 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGCTGCCATGATTGACGTGTTGATAGCCAATGAGAGCTGTTTCTAAGATGGCTGCTCAGAGAGATGACGCAGCGTATTGGCGCTCCACAGTGGGAGCGCTTGCTGTATGTCGGTGGCTGTGCCGTGgtgaaaactaaacagaaaaagGCGGGGATAGTTTCTTTGTTTGGCAGCAACGTGAAGAAAACAAACGTACCCGGGAACACGGTGCAGGGCGAGGAGACGGAACGAGGTCGGCACATGAAGTTAGCAGACAGTTAGCATGGACTCTACAGGACAATATTCCTAACCTGGAGGAATTCTTTCCATCTGTGGACACTTCCGGACTACAGGAATATTAATAAGACAGGAAAGGACGGGGACTGGAGGTTTAGGACAGACTCCAGCTCATCTGTGGGACGAGACCCTTCTGACTTCAGGACGTCCGTCTGAATTAGTTCCCCCTGAAGAACAAGAATGAGTTCTCCACAAAAGCTCATCTGTGGGACGAGACCCTTCTGACTTCAGGACGTCCGTCTGAATTAGTTCCCCCTGAAGAACAAGAATGAGTTCTCCACAAAAGAAAccgagaggaagaggagaaaaacgtcaccactgtcagaactgtgacaaatccttcacaacaTCAGGATATTTAAAGAgtcatcagagagttcacactggagagaaaccTTACTGCTGTGATCTTTGTGGGTCAGCTTTCAAACAACAGAGTAacctaaaaacacatcaacgcattcacactggggAAAAACCTTACCGCTGTGATCTATGTGGGACAGCTTTCAGACAACAGGGACAGCTAAAAagccatcaacgcattcacactggagagaagccgtacagctgtgaacaatgtgggaaaaccttttctgatAGTGGTGACCTTAAAAaacaccagcgcattcacactggagaaaagccatacagctgtgaacaatgtggggaaACGTTTTCTCGAAGTAGTtaccttaaatctcaccagcgcattcacaccggagagaagccgtacagctgtgagcAATGTGGGGAAACGTTTTCTCAACGAAGTAACCTTAAATgtcaccagcgcattcacactggagagaagccgtactggtgtgaacaatgtgggaaaaccttTTCTGAAAGTGGTGTCCTTAAAAAACACCAactcattcacactggagagaagccgtacagctgtgaacaatgtggaaAAACGTTTTCTCAGAGTAGTAGCCTTAAATGTCACCAGcgccttcacactggagagaagccgtacagctgtgatcagtGTGGTGAAACTTTTTCTCGTGGTGATAcccttaaatctcaccagcgcaATCACACTGGAGAGATgccgtactggtgtgatcaatgtggggaaATGTTTTCTCAGAGAAGGTACCTTAAAAaacaccagcgcattcacactggagagaggccgtactggtgtgatcaatgtggggaagtgttttctcagagtagtaaccttaaatctcaccagcgcattcacactggagagaagccgtacagctgtgatcaatgtggtgAAACTTTTTCTCGTGGTGATACCCTTAAAAAACACcagcgtgttcacactggagagaagccgtacgggtgtgatcaatgtgggaaaATGTTTTCTCAGAGTGGTAGCCTTAAAAAACACCAGCGTATTCACACTGCATCGTTGTGAACATGTTTCAGAgctaggcctgtcgcgatagtcaataaatcaattaatcgcgcgataaaaaaaattagcttGATAATTTTTCTgaccgcgataatttccatttgcatgcttgtttgttttcctttctctctctacctctctacctctctacctctctaccaaagagactggatgaCCACTCTCTGTTCCTTACTGTAAcaaggagtgaaccctctttgTCAGTCACATGGTCTTTGTGTGGGGAGGCGGGACTACTCCTGACTGAGAGAGTTGGACCAGGGTTTCCaacagcactttgcagttaaggtgCAATCAAAAGCCACATAGAAATAGATagatataatttattaattatacattatttacattttagtgtttcataaataattgttaaatgtagtaAAGTCTTTAGTCCATTGCACAAACACTCGAGGAATGCTGCAAACATTTGACAGCCAGTACGAATTGCCTGGgagaacatactgtatgtgtcacaAACAACAGAGACGAaatactaaaggagatcaaagacatattgtggatatttaaaatgtcttccggttccagtgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201637 lncRNA upstream 41477 35168089 ~ 35220675 (+) True LOC120573010
XR_005641584.1 lncRNA upstream 50876 35196966 ~ 35211276 (+) False LOC120573010
TU201653 lncRNA upstream 99528 35155187 ~ 35162624 (+) True G149129
TU201650 lncRNA upstream 108148 35150667 ~ 35154004 (+) True G149127
TU201648 lncRNA upstream 114288 35142586 ~ 35147864 (+) False G149126
TU201703 lncRNA downstream 110830 35426249 ~ 35429043 (+) False G149172
TU201708 lncRNA downstream 110830 35426249 ~ 35429043 (+) True G149172
TU201716 lncRNA downstream 143957 35459376 ~ 35459934 (+) True G149180
TU201722 lncRNA downstream 177785 35493204 ~ 35551942 (+) True G149184
XR_005641573.1 lncRNA downstream 363387 35678806 ~ 35679539 (+) True LOC120572998
XM_039822224.1 mRNA upstream 12462 35225746 ~ 35249690 (+) True LOC120572786
XM_039822225.1 mRNA upstream 12462 35225751 ~ 35249690 (+) False LOC120572786
XM_039822481.1 mRNA upstream 49715 35211322 ~ 35212437 (+) True LOC120572947
XM_039822211.1 mRNA upstream 80467 35100719 ~ 35181685 (+) True LOC120572778
XM_039822467.1 mRNA upstream 129043 35130259 ~ 35133109 (+) True LOC120572935
XM_039822210.1 mRNA downstream 8964 35324383 ~ 35329220 (+) True LOC120572777
XM_039822452.1 mRNA downstream 152417 35467836 ~ 35475658 (+) True LOC120572927
XM_039823252.1 mRNA downstream 245031 35560450 ~ 35574268 (+) True LOC120573494
XM_039823253.1 mRNA downstream 337583 35653002 ~ 35675644 (+) True LOC120573495
XM_039822478.1 mRNA downstream 484306 35799725 ~ 35801933 (+) True LOC120572944
TU201612 other upstream 119666 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 133949 35122722 ~ 35128203 (+) True G149096
TU201621 other upstream 175203 35073121 ~ 35086949 (+) False LOC120572831
XR_005641491.1 other upstream 294720 34953780 ~ 34967432 (+) False LOC120572767
TU201115 other upstream 448305 34808072 ~ 34813847 (+) False LOC120572627
TU201707 other downstream 110830 35426249 ~ 35429043 (+) False G149172
TU201726 other downstream 472700 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other downstream 801879 36117298 ~ 36122718 (+) False LOC120572849
TU201730 other downstream 807287 36122706 ~ 36262372 (+) False G149187
TU201846 other downstream 1024229 36339648 ~ 36343578 (+) False LOC120572889

Expression Profile