RNA id: TU201703


Basic Information

Item Value
RNA id TU201703
length 2584
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G149172
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35426249 ~ 35429043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGATCACAAAACAGctgattcattcattcattcatgtctCCACAGTAgcgttatatatataatataatataataaagtcCTCATTTCACTCTAAAAGTCTTTAAAATGTCCCAGaacagaagagaagaggagacagtCCGGTTCATTATGTTCTGATTTTAACCTTTCTGGAAGTTTTCACAAGACGAGATATCACAAAttaaaagtttatttaaaaaacaaattcaatGTGGCCATCTGGGCTCTGACTCCTGATACAAGAACCTTTCCAAAAATGTATATAGTTTAGcaaaatccccccaaaaatatataaatatatatatatatatatatatagtggatCTGACTAACAGAGCAAAACTCATGCAACAGCTTCACTGCAACAGCtgaaggaagagaggaaggaaggaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggagggagggagggaggaaggaaggaaggTGCTCATGCTCGGTCTGGGACCGTCACACTTTATAAAAACTGAACTAAAGGAAACAGGAAACCTCCGACCTCTGAACAGATAAACTATTGATTCATCTTTTCATTCAGAAATATAGAAATATActagatagagatatatattcAGACACATGAGAGCTGAGAGGAAACAACTCCTCAGCTGATTTAGCAGAGGTCAAAGgtcggggggtgggggggcctTAAGACTCCACCttacacgcacacgcgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacccactacCAGTCCATGCTGTAATAAATAGAAACATCAGAATATATTCATATGTATGTTTATAGAAGTGATTAAATAGATCTGTTAGAATcatgtacacgttcaaaatctGAGACCAGAGCCCCGAGCCCTGAGCCCCGAGACCAGAGCCCTGAGACCAGAGCCATGAGACCAGAGCCCAGAACCCCGAGACCAGAGCCCAGAGCCCAGAGCCCAGAGCCCAGAGCTCAGAGCCCCGAGACCAGAGCCCCGAGACCAGAGCCCAGAGCCCCGAGACCAGAGCCCAGAGCCATGAGACCAGAGCCCAGAgcccagagaccagagaccagagaccagagcccAGAGCCCAGAGGCCTTTCTCACAGAGGACCAGTAATCTGCAGTCAAACTTTAAGTGTAAACTGTTAGGCTGCAGCAACATGTCTGGTCTCTGTCAGAGTcagagtagagctgtttggCTTCACCAGAGAGGCTGTCACCACCTGAGGGGAGTCAGTGCAGAAAGGAGCTGGGCTTGGACCGGTCCATTACATAGCAGTCAATTAGTATTTAGGGTAAGGCATCACATTTTCACAGCCTGATCCCCGATGTCAGGTCTAGATCAGAGGCTGAAGTAGCCTCCAAGATGCTAAccagagacttctgtaatgtctgaagtagcctccaagatgctaaccagagacttctgtaatgtctgaagtagcctccaagatgctaaccagagacttctgtaatgtctgaagaagCCTCCAAGATGCTAACCAGAGACTTAGCCTCCAAGATGCTAAccagagacttctgtaatgtctgaagtagccTCCAAGATGCTAACCAGAGACTTCTGTTAATGTCActacaataaaaatggacctacataacAAAGTTggttcactgctggctacaagttagcaatcacacacaacaacagctgtcagttgaatggcgttttgagctaacgttagcaattgGCTAAAACGTTTGCCGGCCGTTTAAGCCGTTTAAATGTGAGCATGCGCATCTCACATCTGCACTCActgactcacatcgggtagggACAAGGCCTCTGATTTCTTCCCACCGTGCTGCCTGCAGGGCTCTGCTCAGGGcagaaaaaaacccaaacagGTCTGGTGCCTGTGAGGCAGCGCAAAGGGACAGTGTGACTGTTTTTGGAGAGACGGACGGCCATGTTCAGATGGATGGATTaacaagaaggaggaggaggaagggtttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggcatCCGTCTCTTCTTCCTGTTTCTGTCCCTTTCACAGTGAAGCTCCGCCTCCTCTTCTCTAAGTGGTCAGTCCTCTCCGCTCCAGCTCCCTCGTCTGCTTCAGCTCTTTAATCCTGAAACACACGACAACGTTACAGttaaccagactccatgttaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtacagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201637 lncRNA upstream 205574 35168089 ~ 35220675 (+) True LOC120573010
XR_005641584.1 lncRNA upstream 214973 35196966 ~ 35211276 (+) False LOC120573010
TU201653 lncRNA upstream 263625 35155187 ~ 35162624 (+) True G149129
TU201650 lncRNA upstream 272245 35150667 ~ 35154004 (+) True G149127
TU201648 lncRNA upstream 278385 35142586 ~ 35147864 (+) False G149126
TU201716 lncRNA downstream 30333 35459376 ~ 35459934 (+) True G149180
TU201722 lncRNA downstream 64161 35493204 ~ 35551942 (+) True G149184
XR_005641573.1 lncRNA downstream 249763 35678806 ~ 35679539 (+) True LOC120572998
TU201762 lncRNA downstream 249806 35678849 ~ 35679153 (+) False LOC120572998
TU201775 lncRNA downstream 271483 35700526 ~ 36038269 (+) True G149211
XM_039822210.1 mRNA upstream 97029 35324383 ~ 35329220 (+) True LOC120572777
XM_039822231.1 mRNA upstream 110830 35262152 ~ 35315419 (+) False LOC120572790
XM_039822230.1 mRNA upstream 110830 35262153 ~ 35315419 (+) True LOC120572790
XM_039822229.1 mRNA upstream 110830 35290137 ~ 35315419 (+) False LOC120572790
XM_039822242.1 mRNA upstream 158429 35265633 ~ 35267820 (+) False LOC120572797
XM_039822452.1 mRNA downstream 38793 35467836 ~ 35475658 (+) True LOC120572927
XM_039823252.1 mRNA downstream 131407 35560450 ~ 35574268 (+) True LOC120573494
XM_039823253.1 mRNA downstream 223959 35653002 ~ 35675644 (+) True LOC120573495
XM_039822478.1 mRNA downstream 370682 35799725 ~ 35801933 (+) True LOC120572944
XM_039822374.1 mRNA downstream 386850 35815893 ~ 35820447 (+) True LOC120572867
TU201639 other upstream 140515 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 140694 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 283763 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 298046 35122722 ~ 35128203 (+) True G149096
TU201621 other upstream 339300 35073121 ~ 35086949 (+) False LOC120572831
TU201726 other downstream 359076 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other downstream 688255 36117298 ~ 36122718 (+) False LOC120572849
TU201730 other downstream 693663 36122706 ~ 36262372 (+) False G149187
TU201846 other downstream 910605 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 910605 36339648 ~ 36343478 (+) False LOC120572889

Expression Profile