RNA id: TU201782


Basic Information

Item Value
RNA id TU201782
length 1981
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G149212
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 35774884 ~ 36318736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAGTTCTATtctattcagtttatttaagaagaggacagagcagattaataaaacaaatgattatacatgggttaaaaatgacagaattagccaaaagctcGCAAACTTCCCCCAAATACAACCAGCTGGTCTATCCACAATTAAAGAAACTGTTCAGtaacacacataacaaacataTTCAGCATCTTACTGAGGTATAACTAATTACTGAAATAACAAATACTTTACCTGACACAAGCTAGCGTTAATGTATCAGGACAGTCAGTTAACTTACTGTTAGCTTAAAAGGAGGATTAATGTTACCTTTTGTGATATTAATTTCAACGATTTTGTGATGGATAAATATTGTAAAACATCTTTTTCGTCTGTGAAATGTTATTCCGTGTTGCTTTGTTTAGCATTTCTTTTACATGAACATCCAAAAGCAGTACAAAAATCATTTTCTGAGTCTTTAAGATCAGCTGTTCGTCTCAAGAtggcagcagcacagacacagtttaaacacattaactgttcaagtcattttttaagcagcagcagcagacatgtTCTGATTAAAGCTTCTTAGTTATGAAGATTTGGTTCTTCTCTTCATCTTAAAAGgacaataaactaaatatttcagCAATTTGACATTACATTAGTAAACAGTGATgggattttttaaattaagaacAAATGCTCCTTCATTGCAGCATTAGTTAAATAGCGCTAGCAGTTGAACCCTGAACTCAACATATTGTATTACAGGAATAAAAGCTAATTTTGAGTGAAATGAATCCCTTCAAAGGGAGGGAGTGTAATATGTAGTCGTAGCCAGGATAACATCCATGGTGTTGAGAAGATCAAGTTACTgctggtcagccttcaatgtggagagaagatcagaatataacaacacagctatcagggcatgaggaggaggcaggaggaaacagcttggctctgaaacatgttcactacgaggcagtgtgaatgagctggtgtcttttaaggtgactactctgagaaaaagttttcccacattgttcacaccagtacggcttctctccagtgtgaacacgtctGTGGCATTCTAGGTTACCACACAGAGAAAAGGTTTTACCACATaaatcacagctgtacggcttctctccagtgtgaatgcgctgatGTATTTTTAGGGTACTCTGGTGTGTAAAAGCTGCCCCACATATaacacagctgtacggcttctctcctgaGTGAATGCGCTGATGTATTTTCAGGTTACTCTggtgtgtgaaagctgccccacattgatcacagctgtgaagattctctccagtgtgaaggcgTTGATGTCTTTTTAGGTCACTCTgtcgtgtgaaagctgccccacattgatcacagctgtgaagcttctctccagtgtgacgGCGTTGATGGTTTTTTAGGTCACTCTgtcgtgtgaaagctgccccacattgatcacagctgtacggcttctctccagtgtgaaggcgTTGATGTCTTTTAAGGTTAAcctgttgtgtgaaagctgccccacattgatcacagatgtacggcttctctccagtatgAATACGTTGATGGCTTTTTAGGGTGATCTgtcgtgtgaaagctgccccacattgatcacagctgtacggcttctctccagtgtgaatgcgttgatgtcttTTAAGGTTAACttgttgtgtgaaagctgccccacatcggtcacagctgtacggcttctctccagtatgAATACGTTGATGGCTTTTTAGGGTGATCTgtcgtgtgaaagctgccccacattgatcacagctgtaaggcttttctccagtgtgaatgcgttgatgtgtttttagagAACTCTgtagtgtgaaagctgccccacattgctcacagctgtgtagattctgtccagtgtgaactctctgatgaatatCCAGATGTTttgaaggatttgtcacagtgttgaCAGTGATGACGTTttggtccctctcctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201732 lncRNA upstream 17739 35834985 ~ 35880373 (+) True G149188
XR_005641604.1 lncRNA upstream 72505 35824390 ~ 35825607 (+) True LOC120573030
XR_005641573.1 lncRNA upstream 218573 35678806 ~ 35679539 (+) True LOC120572998
TU201762 lncRNA upstream 218959 35678849 ~ 35679153 (+) False LOC120572998
TU201722 lncRNA upstream 346170 35493204 ~ 35551942 (+) True G149184
TU201787 lncRNA downstream 49664 36368400 ~ 36376886 (+) True G149216
TU201855 lncRNA downstream 67880 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA downstream 67880 36386616 ~ 36387723 (+) False G149274
TU201859 lncRNA downstream 69517 36388253 ~ 36388706 (+) True G149275
TU201864 lncRNA downstream 146590 36465326 ~ 36467797 (+) False LOC120572806
XM_039822374.1 mRNA upstream 77665 35815893 ~ 35820447 (+) True LOC120572867
XM_039822478.1 mRNA upstream 96179 35799725 ~ 35801933 (+) True LOC120572944
XM_039823253.1 mRNA upstream 222468 35653002 ~ 35675644 (+) True LOC120573495
XM_039823252.1 mRNA upstream 323844 35560450 ~ 35574268 (+) True LOC120573494
XM_039822452.1 mRNA upstream 422454 35467836 ~ 35475658 (+) True LOC120572927
XM_039822404.1 mRNA downstream 20895 36339631 ~ 36343826 (+) True LOC120572889
XM_039821956.1 mRNA downstream 52143 36370879 ~ 36401016 (+) True LOC120572637
XM_039822353.1 mRNA downstream 102099 36420835 ~ 36427296 (+) True LOC120572853
XM_039822350.1 mRNA downstream 125763 36444499 ~ 36453193 (+) True LOC120572851
XM_039822261.1 mRNA downstream 145725 36464461 ~ 36476242 (+) False LOC120572806
TU201707 other upstream 469069 35426249 ~ 35429043 (+) False G149172
TU201639 other upstream 612378 35262223 ~ 35285734 (+) False LOC120572790
XR_005641493.1 other upstream 612557 35262298 ~ 35285555 (+) False LOC120572790
TU201612 other upstream 755626 35136144 ~ 35142486 (+) True G149095
TU201613 other upstream 769909 35122722 ~ 35128203 (+) True G149096
TU201846 other downstream 20912 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other downstream 20912 36339648 ~ 36343478 (+) False LOC120572889
TU202320 other downstream 618670 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 1032339 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1249177 37567913 ~ 37570708 (+) True G149671

Expression Profile