RNA id: TU201857


Basic Information

Item Value
RNA id TU201857
length 408
lncRNA type intronic
GC content 0.41
exon number 3
gene id G149274
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36386616 ~ 36388121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctaaacccaactgtctcgttcttctttatctaaacccaactgtcccgttcttctttacctaaacccaactgtcctgttcttctttatctaaacccaactgtcctgttcttctttacctaaacccaactgtcccgttcttctttatctaaacccaactgtcccgttcttctttatctaaacccaactgtcccgttcttctttacctaaacccaactgtcccgttcttctttatctaaacccaactgtcccgttcttctttatctaaacccaactgtcctgttcttctttatctaaacccaactgtcctgttcttctttacctaaacccaactgtcccgttcttctttacctaaacccaactgtcctgttcttctttatctaaacccaactgtcccgttcttctttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201787 lncRNA upstream 9730 36368400 ~ 36376886 (+) True G149216
XR_005641519.1 lncRNA upstream 81369 36299360 ~ 36305247 (+) True LOC120572955
XR_005641575.1 lncRNA upstream 154621 36224182 ~ 36231995 (+) True LOC120573000
TU201831 lncRNA upstream 172928 36171657 ~ 36213688 (+) True G149256
TU201859 lncRNA downstream 530 36388253 ~ 36388706 (+) True G149275
TU201864 lncRNA downstream 77603 36465326 ~ 36467797 (+) False LOC120572806
XR_005641598.1 lncRNA downstream 93363 36481086 ~ 36481441 (+) True LOC120573024
TU202175 lncRNA downstream 105330 36493053 ~ 36531194 (+) True G149489
TU202179 lncRNA downstream 182912 36570635 ~ 36587482 (+) True G149492
XM_039822404.1 mRNA upstream 42790 36339631 ~ 36343826 (+) True LOC120572889
XM_039822343.1 mRNA upstream 256513 36117298 ~ 36130103 (+) True LOC120572849
XM_039822374.1 mRNA upstream 566169 35815893 ~ 35820447 (+) True LOC120572867
XM_039822478.1 mRNA upstream 584683 35799725 ~ 35801933 (+) True LOC120572944
XM_039823253.1 mRNA upstream 710972 35653002 ~ 35675644 (+) True LOC120573495
XM_039822353.1 mRNA downstream 33112 36420835 ~ 36427296 (+) True LOC120572853
XM_039822350.1 mRNA downstream 56776 36444499 ~ 36453193 (+) True LOC120572851
XM_039822261.1 mRNA downstream 76738 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA downstream 76765 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA downstream 76773 36464496 ~ 36476242 (+) True LOC120572806
TU201846 other upstream 43038 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 43138 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 124244 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 134593 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 263898 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 549683 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 963352 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1180190 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1289272 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1289272 37676995 ~ 37681109 (+) False G149843

Expression Profile