RNA id: XM_039822261.1


Basic Information

Item Value
RNA id XM_039822261.1
length 1377
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120572806
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36464461 ~ 36476242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGCTTCACTGTGATCTCGGGCTGGCGGCGGAATAGTCGTGTTGTTGCTGTCGAGCCCATTAGTGAGTTTTGAGACGGCGGAGCTCCAGAATCCAGAGTGAGTCCAGCAGCCACAGAGGAGAGCTGCTGGAtctcagagacaaagagaggaatggaggaccAGACCTCCGACCAGAACCCGGAGCAGCGGAGCAACAAGGTCCCCAGAAGACAAGCAGCAGGCTCGGACTCTGATACCACCgatgttcagaaacggagaggaagagagacactCAAACGTCACAACTGTCagcactgtgacaaatccttcacGAGATCAACGTctttaaagattcatcagagagttcacactggagagaatctgcacagctgtgatcaatgtggggcagctttcacacgacAGAGTTCCCTAAAaagacatcaacgcattcacactggagagaagccgtacagctgtgatcaatgtggggctgCTTTCTCACAACAGACTGACCTAAAaagacatcaacgcattcacactggagagaagccgtacagctgtgatcagtgtggggcagctttcacacaccAGGGTCACCTTACACGTcaccaacgcattcacactggagacaaACCTCACAGCTGTGATATATGTGAGAAAGCTTTCACCACTAAAAGAGATGTTGAAGACCACCGACTTGTTCACACTGGAGTGAAACCGTACTGGTGTGATCGATGTGGGAAGACTTTTTGTAATAGTGGTAAACTTAAAGTCCACCAGcgcgttcacactggagagaagccatattggtgtgaacaatgtgggaaaacattttatagtaGTAGTCACCTTAAAGtccaccagcgcattcacactggagagaagccatattggtgtgaacaatgtgggaaaacattTTCTAGTAGTAGTCACCTTAAAGtccaccagcgcattcacactggagagaagccatattggtgtgaacaatgtgggaaaacgttTTCTGATAGTGGTAACCTTAAAAgacaccagcgcattcacactgcctcGTTGTGAACATGTTTCAGAGCCAATCTGTTTCCTCCTGCCACCTCCTCATACCCTGATAGCTATGTTGTTATATTGtgatcttctctccacattgaaggctgaccagcAGTAACCTCTATCTtctgaacagcatggatgttatCGTGGCTACGACTACATATTACGCTCCCTCCCTTTGAAGAGATAGTCCTGTTAGAAGTCTGTCAGAGGCTGTTTCTCCTGATTCAGTTGGTTTCAATGTGTTCCTATTATTGATTTTGTCTGTCTCATAcatagggctagatttatcaagccgtttgcgtctgtttccaggcgctaattggtcgcaaagacgggcgtaaccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201859 lncRNA upstream 75755 36388253 ~ 36388706 (+) True G149275
TU201855 lncRNA upstream 76340 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA upstream 76738 36386616 ~ 36387723 (+) False G149274
TU201787 lncRNA upstream 87575 36368400 ~ 36376886 (+) True G149216
XR_005641519.1 lncRNA upstream 159214 36299360 ~ 36305247 (+) True LOC120572955
XR_005641598.1 lncRNA downstream 4844 36481086 ~ 36481441 (+) True LOC120573024
TU202175 lncRNA downstream 16811 36493053 ~ 36531194 (+) True G149489
TU202179 lncRNA downstream 94393 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA downstream 109297 36585539 ~ 36587482 (+) False G149492
TU202223 lncRNA downstream 167810 36644052 ~ 36688498 (+) False G149524
XM_039822350.1 mRNA upstream 11268 36444499 ~ 36453193 (+) True LOC120572851
XM_039822353.1 mRNA upstream 37165 36420835 ~ 36427296 (+) True LOC120572853
XM_039821956.1 mRNA upstream 63445 36370879 ~ 36401016 (+) True LOC120572637
XM_039822404.1 mRNA upstream 120635 36339631 ~ 36343826 (+) True LOC120572889
XM_039822343.1 mRNA upstream 334358 36117298 ~ 36130103 (+) True LOC120572849
XM_039822171.1 mRNA downstream 161255 36637497 ~ 36646194 (+) True LOC120572753
XM_039822416.1 mRNA downstream 175194 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA downstream 175194 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA downstream 175927 36652169 ~ 36657906 (+) False LOC120572900
XM_039821959.1 mRNA downstream 242244 36718486 ~ 36720358 (+) True LOC120572642
TU201846 other upstream 120883 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 120983 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 202089 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 212438 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 341743 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 461164 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 874833 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1091671 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1200753 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1200753 37676995 ~ 37681109 (+) False G149843

Expression Profile