RNA id: TU202175


Basic Information

Item Value
RNA id TU202175
length 866
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G149489
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36493053 ~ 36531194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCACTTAGTCTTCATTAAAACAAACTGAATCAGGAGAAACAGCTTCTGACAGACTTCTAACAGGACTATCTCTTCAAAGGGAGAAAGCGTAATATGTAGTCGTAGCCACGATAACAAACATGCTGTTCAGAAGATAAAGTTACTgctggtcagccttcaatgtggagagaagatcagaatataacaacacagctatcagggtatgaggaggaggcagagggaaACAACTTGGCTCTGAAACATGTTCACAATgaggcagtgtgaatGCActggtgagatttaaggctACCTCTCTGAGAAaacgttttcccacattgttcacagctgtacggcttctctccagtgtgaacacgttggtgagatttaagggcactactctgagaaaacgttttcccacattgttcacagctgtatggcttctctccagtatgAATACGTTGGTGACATTGAAGGTGACTCTgtcgtgtgaaagctgccccacattgatcacagctgtgcaGATTTTCTCCAGTatgaatgcgttgatgtattTCTAGGTGACTCTGTCGTGTGAAAAcagccccacattgatcacagctgtacggcttctctccagtgtgactctgttgatgtgtttttaggtGACTCGGTTGTGAGAAAGcagccccacattgatcacagctgtacggcttctctccagtgtgaatgcgttgatgtgtttttaggATACTCTgtcgtgtgaaagctgccccacattgatcacagctgtacggcttctctccagtgtgaactctctgatgaatctttaaatacCATGATCTTGTaaaggatttgtcacagtgctGACAGTGGTGACGTTTGAGTCCCTCTGTTCCTctccgtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641598.1 lncRNA upstream 11612 36481086 ~ 36481441 (+) True LOC120573024
TU201864 lncRNA upstream 25256 36465326 ~ 36467797 (+) False LOC120572806
TU201859 lncRNA upstream 104347 36388253 ~ 36388706 (+) True G149275
TU201855 lncRNA upstream 104932 36386616 ~ 36388121 (+) True G149274
TU201857 lncRNA upstream 105330 36386616 ~ 36387723 (+) False G149274
TU202179 lncRNA downstream 39441 36570635 ~ 36587482 (+) True G149492
TU202184 lncRNA downstream 54345 36585539 ~ 36587482 (+) False G149492
TU202223 lncRNA downstream 112858 36644052 ~ 36688498 (+) False G149524
TU202229 lncRNA downstream 128992 36660186 ~ 36662049 (+) True G149527
TU202219 lncRNA downstream 131037 36662231 ~ 36688498 (+) True G149524
XM_039822261.1 mRNA upstream 16811 36464461 ~ 36476242 (+) False LOC120572806
XM_039822260.1 mRNA upstream 16811 36464488 ~ 36476242 (+) False LOC120572806
XM_039822259.1 mRNA upstream 16811 36464496 ~ 36476242 (+) True LOC120572806
XM_039822350.1 mRNA upstream 39860 36444499 ~ 36453193 (+) True LOC120572851
XM_039822353.1 mRNA upstream 65757 36420835 ~ 36427296 (+) True LOC120572853
XM_039822171.1 mRNA downstream 106303 36637497 ~ 36646194 (+) True LOC120572753
XM_039822416.1 mRNA downstream 120242 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA downstream 120242 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA downstream 120975 36652169 ~ 36657906 (+) False LOC120572900
XM_039821959.1 mRNA downstream 187292 36718486 ~ 36720358 (+) True LOC120572642
TU201846 other upstream 149475 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 149575 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 230681 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 241030 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 370335 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 406212 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 819881 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 1036719 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 1145801 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 1145801 37676995 ~ 37681109 (+) False G149843

Expression Profile