RNA id: TU202246


Basic Information

Item Value
RNA id TU202246
length 1658
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G149544
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36760947 ~ 36767272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAGTCACTAATAATCAGCATGTGGCctcgttttatttcatttatttacatttaattgTTCCACattccaaaacatttaaaacaattcaatCATTGACCTTATTCACATAAATAAATCAGCTGTTTGCTTTTGATTGTCTGACTTTGTATGACAccatcagtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctctgtgatAGAGGGTGTATCATCAATCATTGACGTTATTCTAAATGTCAGATAAATAAATCAGCTGTTTGCAAGATAAAGATCTTGCAAACAGCAAAATCTTTAGTTTCCATATGTTCCTTTACTTATTaatgaacaaataaaataacataacatataCCAGCTAGAGCCACAGGATATGAAGAAAATATGCCATGAGATTTCCAGAATCCCAAGCTACTAAAAAAAATGCTAAAGCATGccaggaaaataataataatcatttcaTAAACTATAGGTTCCTCGCACTTTCAGTGCCTGGGACGACTTATAACTAGAGACTATGTATGAGTCACActaaaacaataaatcattctcAGTAAGTAATCATGTAAATGTTTTCCTCATGTATGACTGGACTTTTCTTTTATATACCCAAATATTCAGGATACTTtttgattggctaacgtgggcttaaGCTTcttgttacactgccacctacagatTTGGCGTGTATGTTtggcatatacagtatgtgctcttaacggcatatatacacgggtacgtgtaaacaaacacttttctgaaaactgaccgCTGTGcacgttattttttaaaacggagaggttgaaatgtttatgaaaatagccggccacgtgtaaacataGCATAAATTTCAATTAACTGCACAGCCCTACTCTGAAACATGTTCACTATGAGGCAGTGTGAAGGCGCTGGTGAGAGTAAAGGCTACTACTCTGAGCAAAGGTTtttccacattgttcacaccagtacggcttctctcctgtgtgaatgcgctggtgttTTTTAAGGTCACTACTCTGAGCAAAAGTTTttccacattgatcacagctgtacggcttctctcccgTGTGAATGCGCTTGTGTGTTGTAAGGTGACTATTGTGAGAAaaggttttcccacattgttcacaccagtaggGCTTCTCTCCGGTGTGAACACGTCGGTGGCTTTCGGCATGTTCTGGAGTTTTGAACGTTTTCTCACACAGATCACAGCTGTGAGGTTTATCTCcggtgtgaatgcgctggtgtcTTTTAAGGTGGTTACTCTCAGTAAAAGTcttcccacattgatcacacctgtgcggcttctctccagtgtgaatgcgctggtgtcTTTTAAGGTGGCCACTCTCACAAAAGTTtttcccacattgatcacagctgtacggcttttCTTCAGTGTGAATCCGTTGATGGTTTTTTAGGTTACCCTTTTGTGcaaaagctgccccacattgatcacagctatACGGCttgtctccagtgtgaatgcgttgatggaTTTTTAGATTACtctgttgtgtgaaagctgccccacattgatcacagctgtaaggtttGTCTtcagtgtgaactctctgatgaatcttgAAATATTCAGATGATGTGAAGGATTTGTCAAAGTAGTCACGTTTGGgtccctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202237 lncRNA upstream 62828 36677288 ~ 36702681 (+) True G149535
TU202219 lncRNA upstream 77011 36662231 ~ 36688498 (+) True G149524
TU202220 lncRNA upstream 77011 36676461 ~ 36688498 (+) False G149524
TU202221 lncRNA upstream 77011 36676461 ~ 36688498 (+) False G149524
TU202229 lncRNA upstream 103460 36660186 ~ 36662049 (+) True G149527
TU202283 lncRNA downstream 3964 36771236 ~ 36779958 (+) True G149556
TU202293 lncRNA downstream 79103 36846375 ~ 36847369 (+) True G149564
TU202321 lncRNA downstream 241885 37009157 ~ 37084314 (+) True G149585
TU202343 lncRNA downstream 248886 37016158 ~ 37031400 (+) False G149606
TU202344 lncRNA downstream 248886 37016158 ~ 37020686 (+) True G149606
XM_039821959.1 mRNA upstream 45151 36718486 ~ 36720358 (+) True LOC120572642
XM_039822416.1 mRNA upstream 107603 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA upstream 107603 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA upstream 107603 36652169 ~ 36657906 (+) False LOC120572900
XM_039822171.1 mRNA upstream 119315 36637497 ~ 36646194 (+) True LOC120572753
XM_039823028.1 mRNA downstream 329640 37096912 ~ 37101599 (+) True LOC120573341
XM_039821963.1 mRNA downstream 334304 37101576 ~ 37121087 (+) True LOC120572645
XM_039823029.1 mRNA downstream 358925 37126197 ~ 37145176 (+) True LOC120573342
XM_039823026.1 mRNA downstream 442788 37210060 ~ 37236516 (+) True LOC120573338
XM_039821966.1 mRNA downstream 503018 37270290 ~ 37282392 (+) True LOC120572648
TU201846 other upstream 421931 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 422031 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 503137 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 513486 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 642791 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 170134 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 583803 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 800641 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 909723 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 909723 37676995 ~ 37681109 (+) False G149843

Expression Profile