RNA id: TU202414


Basic Information

Item Value
RNA id TU202414
length 232
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G149666
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37456058 ~ 37456289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtatgtgtatgtatgtgtgtgtgtttgtctttgtatttgtgtgtgtgtgtctgtgtatgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202408 lncRNA upstream 24223 37410440 ~ 37431835 (+) True G149660
TU202402 lncRNA upstream 105182 37350467 ~ 37350876 (+) True G149656
TU202393 lncRNA upstream 183566 37271894 ~ 37272492 (+) True G149647
TU202390 lncRNA upstream 186062 37269249 ~ 37269996 (+) True G149646
TU202650 lncRNA downstream 176368 37632657 ~ 37632882 (+) True G149833
TU202653 lncRNA downstream 179736 37636025 ~ 37670638 (+) True G149835
TU202654 lncRNA downstream 179911 37636200 ~ 37670638 (+) False G149835
TU202656 lncRNA downstream 180428 37636717 ~ 37637063 (+) False G149836
TU202657 lncRNA downstream 180428 37636717 ~ 37637214 (+) True G149836
XM_039823027.1 mRNA upstream 43361 37387048 ~ 37412697 (+) True LOC120573339
XM_039821966.1 mRNA upstream 173666 37270290 ~ 37282392 (+) True LOC120572648
XM_039823026.1 mRNA upstream 219542 37210060 ~ 37236516 (+) True LOC120573338
XM_039823029.1 mRNA upstream 310882 37126197 ~ 37145176 (+) True LOC120573342
XM_039821963.1 mRNA upstream 334971 37101576 ~ 37121087 (+) True LOC120572645
XM_039821969.1 mRNA downstream 18179 37474468 ~ 37502157 (+) True LOC120572651
XM_039823031.1 mRNA downstream 76986 37533275 ~ 37558146 (+) True LOC120573344
XM_039823030.1 mRNA downstream 76986 37533275 ~ 37558146 (+) False LOC120573344
XM_039823032.1 mRNA downstream 76986 37533275 ~ 37558146 (+) False LOC120573344
XM_039823033.1 mRNA downstream 76986 37533275 ~ 37552286 (+) False LOC120573344
TU202405 other upstream 104214 37351075 ~ 37351844 (+) True G149657
TU202320 other upstream 517916 36937406 ~ 36938142 (+) True G149584
TU201846 other upstream 1112480 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 1112580 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 1193686 36122706 ~ 36262372 (+) False G149187
TU202419 other downstream 111624 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 220706 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 220706 37676995 ~ 37681109 (+) False G149843
TU202671 other downstream 220706 37676995 ~ 37681109 (+) False G149843
TU202698 other downstream 346804 37803093 ~ 37814879 (+) False G149853

Expression Profile