RNA id: TU202665


Basic Information

Item Value
RNA id TU202665
length 3953
RNA type TUCP
GC content 0.46
exon number 2
gene id G149843
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37676995 ~ 37681109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGACTgtaaaaaatgtttcttttacTCCTGCAAAAAgcacaaatgaatgtggttgAACACTGCCATCTGCTGGTGCTATTAGGAGCCACCAGCCTCTGGCCCCCCCACACAGGTGTGTTAGTGTAGTTATTCTAGGTTGATTACACTCTGCTCAGACACTTCACTCACAGGTTCAGTGTGGACACACCAGACAGGATCAGAAGGCATACGTGCAGGTTAGTTCCCAAATCCCACCACGGCCACACCAAGACCTGATCTATGAAGCAGAGTGACTGGttggttaggcatttgacctcgaggggttaaggttaggatagggttagggttacgtTACAGGGAATTTGGGACattaaactgcacgtatacggAAACAGAAAGCTGTGAGTAACAATGAGTaaatacaacaacacaaaggaacagcagcagcttgaacaacaacaacactgaaCGGTGACAGTTATAATGTTGAATCTGTAgtgtaaatatataaaagtatTACACAAAATGCACATTTGAGTCTTTGTCTTGCAGGCAGAGACCGCTGGCAGTTTGACTTCTATCCAGCTACACAAAGCTGTAACCAGAGCATCTGCACCCGAACCAGGAAGGACCAGGTCAGTggtgattttagaccctttttaggggggcttttaaaaaaaaaactaaaatcaattttagtgcttcaagtttTCAtgaagtttctatatcagaaatttgggttttctttcaaccaaagcgtcaaaagaaataatgtggatggttccctacaaccgTCTTCACAAGATAAATAAATTCACTGCCTTCacttcactactttcattgaatttgggggttttagtcaattttatagctttaataaaatgttttgataaAAGAACGTCAGAAAAAGCGCCGAAagaatcgacaaaaacatcagaaaaagtgactaaaacgtCAAAACATTcccaaaaacatcgggaaaagtgtaaaaaacgacgaccaaaacattgaaaaatgttTACACAGAAAAGCAAAGTTGCACGAAGACAACAGCAGGGTTAttatcctgtgtgtctgtgcacctGTAACCATGTCAAGGGaagattatttttaatttattggtTGTTTACACCTCACtatcatttcatttgattctgGTCCTTAAAGGGACTTTGGTAGTTTATTTTCATATGTTCAATATCTTGCATGTATCCTCTGTTATaataacaaatacatacactcacctaaaggattattaggaacacctgctGAGATCCTAACAATCGTTATccagtgaaattactgatttagcagagggggggggggggttaacacttttgcaaggcaccgtatttgtgtcacattctcattaggggctgagcccccctaaaggtctggtcCTAGAACCGCCCTTGTTAGgagctgagcccccctaaaggtctggtcCTAGAACTGCCCCTGTTAgaagctgagcccccctaaaggtctggtcCTAGAACTGCCCCTGTTAGgagctgagcccccctaaaggtctggtcCTAGAACTGCCCCTGTTAGgagctgagcccccctaaaggtctggtcCTAGAACTGGCTCTGTTAGGGGCTGAGCCCTAAAGGTCTGGTCCTAGAACTGGCCTCTGTTAGgagctgagcccccctaaaggtctggtcCTAGAACTGCCCCtgttaggggctgagcccccctaaaggtctggtcCTAGAACTGGCTAtgttaggggctgagcccctcTAAAGGTCTGGTCCTAGAACTGGCTTtgttaggggctgagcccctcTAAAGGTCTGGTCCTAGAACTGCCCCtgttaggggctgagcccccctaaaggtctggtcCTAGAACTGCCCCTGATCTAGGTTCTGCCTGGTTTTCACTGTTTGATAAACCATAATGTTTCAGATAGATGTCATTGAAAGGCGATCGTATATCCCTTAAATAACCTGGTGATAGTTATGTTAGGAcattaacgtggtttaatggaCCTAAACAACCATCAATCATCACCaatctctctcatattgctcctcgtAACCACTGACAACTGTCAAAACATCTAGCCCATCCGATcaggaaaaagcttaatgttTCCTTACAATAggctaaccctaatcctaacccaATAGGCTGTAAGGAGGCAGAAACTCTTAATGTctgataacgtccataataatggGACTTTGGGTTAGGTGTTTTGACAGTTGTCAGTGGTTATGAGGtgcaatatgagagagagattaggtgatgattgatcgttgtttaggtacattaaaccgcgttaagctttttcacgttaagagTTTTCTAATGTCCCGTTACGTCAGGTTTGGTGGGAGAGTGTAGTTCAGCGGTGGGACAGCGACTATGTTCTGGATGAATGGGCGAGTAGTCTGGTCTCTATAGttccccaaagcccaagatgttgtccctaaatgtcttgttttgtccacaactcaaagatattcagtttagtCGACAACTTATGAACTAATCCAATCATCTTTCTTCTCTCTACTAATAtagatttattttacatttacatatggTGACTTTTAAATGTCCGTATGGTTAAATAAATAGAACACAATTCATGTACAGCTTGTTAAGTGTTTGTTGTGGGAGAGGACTATTTAATGCTGTTCAGGAAGACCAGAGACTAATGGAGGCCAAATGCTTAATACAGTCATTATCAGGTTGTAACGGTATGTGTATTCCTCCCCTATAACTCGTTGGTTCCAGCATCACTATGGTCTATATCTAGTTactagtggcggcgccctctagtggccgtagtagttctgacagGAGCACAGCAGAAGGTAAGGTGAGGACGTATAAGAGCACCAAATGTCCTGGTAAGGAGATAGTTTTAATTTATATGTACCTCTGCTCAGATCCTCCTTCCCAGTCCGAACCCTAACCCTGAACCATTACACCCCACCAGTCATTAGTACGGTCCATCAGAAGTGGACATGTCCAGAGTGTGGATTGGGCTGCAGGTTCCGGTCCAGCTGCCTGCTGACCGAGTAGTGTTGGGCCAAAGACTCGTCCGTCCACTCGGTTCTGGACAGCAGCTGGTCCATGTGAGGCCCCAGAGTCCTGTGTGGGAGTTGGTATGGACTGAGACCGGGCTCCCGCTCCAGTAGGGACTGTCCCGGGGCTCGATGTGGCCCCTCAGAACCATAATGTGGACCCGTCAGTACAGAAGTGTCCCGATGCTCGCCCATTGGATACAGCTGCTTTTTATGGATCTGAATTTGGTCCTGGTGTGCTATTCTCGCATGGCACAGCTGCTTTTTCTGAACTTCAAGATCCATCTGGGTATGGTACTGCTGTTTCTTCTGATTCTGAATGTTGTCCTGGTCCTGAAGGTCCATCTGGGTATGGTACTGCAGTTTCTTGAGATTCTGAATGTTGTCCTGGTCCTGGAGGTCCATCTGGGTATGGTGCTGCTGTTTCTTCTGATTCTGAATGTTGTCCTGGTCCTGAAGGTCCATCTGGGTATGGTACTGCTGTTTCTTCTGATTTTGAATGTTGTCAAGGTCCTGGAGGTCCATCTGGGTATGGTACTGCTGTTTCTTCTGATTCTGAATGTTGTCCTGGTCCTGGTGGTCCATCTGGGTATTCTTCTGGTTGTGGTCCGTGCCGTGTTGGTCTACCTGAGCCTGGTACTGCTTCTTGTGATTTTGGATTTGCTCTTGTTGTTCCTGGTTGTCTTGAAGGTCCATCTGGGCGTGGAACTGCTGCTTCTTTTGGCTCTGGATCTGGTTGTGGACCTGGTTCTTGATGTCCTTCCAGTGTCGTCCTCTGAGGACCGGTTCCAGGTCCAGACAGCGCTGACAGATCTCCTTCCCTGGCACCGACTGGACCAGAACGTGGACTCCCAACTGTCTCCAGACTGCCTCCTTCTCTGCAGACGACCAGGGCCGACGTCGGACCTTCCTCGGAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202653 lncRNA upstream 6357 37636025 ~ 37670638 (+) True G149835
TU202654 lncRNA upstream 6357 37636200 ~ 37670638 (+) False G149835
TU202657 lncRNA upstream 39781 37636717 ~ 37637214 (+) True G149836
TU202656 lncRNA upstream 39932 37636717 ~ 37637063 (+) False G149836
TU202650 lncRNA upstream 44113 37632657 ~ 37632882 (+) True G149833
TU202682 lncRNA downstream 26218 37707327 ~ 37713407 (+) True G149847
TU202696 lncRNA downstream 48164 37729273 ~ 37729518 (+) True G149851
TU202697 lncRNA downstream 52663 37733772 ~ 37733982 (+) True G149852
TU202717 lncRNA downstream 57380 37738489 ~ 37739284 (+) True G149856
TU202710 lncRNA downstream 62065 37743174 ~ 37814879 (+) False G149853
XM_039822926.1 mRNA upstream 44408 37613778 ~ 37632587 (+) True eno3
XM_039822927.1 mRNA upstream 44408 37613778 ~ 37632587 (+) False eno3
XM_039822928.1 mRNA upstream 44408 37617918 ~ 37632587 (+) False eno3
XM_039823046.1 mRNA upstream 74923 37594216 ~ 37602072 (+) True LOC120573353
XM_039823031.1 mRNA upstream 118849 37533275 ~ 37558146 (+) True LOC120573344
XM_039823161.1 mRNA downstream 156876 37837985 ~ 37839036 (+) True LOC120573434
XM_039823531.1 mRNA downstream 181061 37862170 ~ 37883336 (+) True mogat3a
XM_039822677.1 mRNA downstream 207051 37888160 ~ 37907366 (+) False zgc:153012
XM_039822676.1 mRNA downstream 207052 37888161 ~ 37907366 (+) True zgc:153012
XM_039822678.1 mRNA downstream 207053 37888162 ~ 37906970 (+) False zgc:153012
TU202419 other upstream 106287 37567913 ~ 37570708 (+) True G149671
TU202405 other upstream 325151 37351075 ~ 37351844 (+) True G149657
TU202320 other upstream 738853 36937406 ~ 36938142 (+) True G149584
TU201846 other upstream 1333417 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 1333517 36339648 ~ 36343478 (+) False LOC120572889
TU202698 other downstream 121984 37803093 ~ 37814879 (+) False G149853
TU202708 other downstream 162112 37843221 ~ 37848576 (+) False G149853
TU202808 other downstream 583328 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other downstream 583328 38264437 ~ 38351833 (+) False LOC120573406
TU202810 other downstream 583328 38264437 ~ 38351833 (+) False LOC120573406

Expression Profile