RNA id: TU202698


Basic Information

Item Value
RNA id TU202698
length 3230
RNA type TUCP
GC content 0.45
exon number 8
gene id G149853
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37743174 ~ 37851881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGCATGCTGGGAGCTGGTCGTAGCATGCCTTCAAAGTCGGTAAGCTGTTTCAAAAGAATGGGCGTGGTTATTACCCCGCCCCTCTGTTTATAAGGATAGGAAAAGAAAGAACTTTCTCCACCATCATCAGAACCCTTCCTACCTATAGTCATACAACATAGGCAGCAGAAGAAGAGAGCAGTGAGTTGCCTGGGAGAGCAGAGACATGAGGACTGAACTACAGAGTGGCTGTTTCCTGAgagctgtgtgtctgctgctggtgacctttgaccccggcGCTGCTAAACGCTGTCCGACATGTGACCCAGGTTACTTTGTGATAAAGAACTGTTCAGGGAATGAGGGAATTCAGTGTAGCCGCTGCACAGACTGCtcagCGTCTCATAAGGAAACTCTGGTTAATTGTTCCACGTTTGCCGACTCGTTGTGTGGAAACAAGAGCCCACCTACGACGGCCCAACCTGCAGGCGGAGATCATACGGCAGTTCCTCAGGACGTCACAACCAACCCCCGCCCCCTGGAAATTACCTCTGATAGTAGAGTCTGCTGCTGAAGTCTGGATCCCCATAACTGTGACAGTATCGTCTCTGTTGCTGGTTCTGCTGGCCGTGTCTCTCGCCATGCTGTCCCGCTGGAAACACCAACCCAAGAAACCAGACGGTCCTGATCAGGTGTGACTGAAGATGAACAGATCAGGGGttgtcaaacttttttcaataatgtacctcctttgaattgtgtttttaacatatttttaaaggaGCATTTTGCTAAAAGttcacataccccctgcagtactccaaagtacccccagGGGTAcagtaccccctgcagtactccagcATACCCCCAGGGGTACGGTACCCCCTGCAATACTCCAGCGTACCCCCAGGGGTaccgtaccccctgcagtactccagcGTACCCCCAGGGGTAcggtaccccctgcagtactccagcATACCCCCAGGGGTACGGTACCCCCTGCAATACTCCAGCGTACCCCCAGGGGTaccgtaccccctgcagtactccagcGTACCCCCAGGTGTgggtaccccctgcagtactccagcgtacccccatttgagaacctCTGCTGTAGATACTCAACATCAGCCTAAAGGTGTCATGGTGCATTTCTGACACAGCGCTTTGTCTAAAAGTGTAACGTTGATGAAAGTTGTTCTAAAGTATACTCTGTAGTATTATGTATACTCTGTACTGttagattcaatcggtttcagtcagagtgtgcacaaggcgacgcactgttttaaccacaccctcgacctttagctggcatatggtattgaaattgaggatttaataatataaaacacctccgaaccacattatctaaagacatagctactctggatggtattgccctggcctccagcgctcccagaatgcagagttacttgtggtacctagagtctctaaagcAGAATGGAagccagagcctttagttaccaggctcctctcctatggaaccagctcccaatctgggtttggggggcagaaactgtcacctcattcaagaatgaacttaaaactctcctatttgataaagcttatagttagggagtgaggagttgcagtgtccacctaactggcccacctgcttctcttcataattgttagattaataatacataacaaagtagagggaggcaggccaacACAGCCCGATctggcaggggagagttcaaagCCCGAACAGGTTACCTCTCCTTAtgtcctgtctctcttagttacgctgttatagttctagactgcagggggacttccttccttcctttgacactgagctgctctctcctctccatttctattactatttgtgcgcatcccgtcccagaaatgcttgttattaatcctagcttctggggagtttactccccggagtccttatgttttttcccccagcgtatttccttggagaacgttggcaccaagatcctggttgcagctgtcgccgtggtcctgctgcactccctgctgagctcagcggtgccctgcaatgtcatactgcgtcctgctgaaccctgctgcttcctgctgaaccctgctacttcctgctacgtccatccatgctctgctgggccacgctacatcctgtaacgccctgcagcgccctgatatgacatgaactactacgactaccatttgaagtcactgttccattattaatgggactattatcgccactgttcatcatatccccaaccggcccgtcagacacctcctaccaagagcctgggtctgtcccaggtttcttcctaagagGGAGTTtgtcctcgccactgtcgcactgcttgctcttgagggaattactgtaattgctgtAATTGTAGGGGCTTTGTAAATTTTAgggtgtggtctagacctactctatctatctaagtgtctcgagataactcttgttatgatttgatactataaacaaaattgaattgaattgaatagtagTAGTGTACTCTGTAGTATTATGTATACTCTGTAGTAGTAGTTTACTCTGTAGTATTATGTATACTCTGTAGTATTGTAATGTTTAAAGAGGTCCAGTGTGAACATTACCTGAGATTAACATCTGTTTGGTGTGAAAGGGTTAAAGGTAGACAGGTATGAGGGGGGCGGGTTCATACTCACACACCTTATCAGGTGTAACCATGGTTACAGGTAGCAACAGAAACTCACACACCCCCAGCGTTACCACGGAGATTATTTGGTTTACTGCTGACGTAGAGGGTGAAGTTTACTGGAACTGTTTCATTTATTATTACTCTTCttctttattatatatatacagtatacatatatatatatatatatatataatatatatatatatatatatatatatatatatatatatttaattttttatatgtttgtgtcagaatgttctggatctgatctgttttattttctgtcttttattttgaaatgtaaccCTAAAAATATGAAACCCTAAAAATATGAAACCAGTTTAACCCAGTGTACCCTCTGAGGTCTGCGGAGATCTtcttaaagtatttatttatttatatatatatatatatatatatatatataactgatccctttgtgtttcatatcaaactCAGCTTCCTGTTAGCAGGAGAACTCTAAACAACTTCTGCCGTCTGGTTTAAGCCCGTTTCTAATGTCTCCAAatcaaggcaccaatcacaaccctaactagggttgggtaccggaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202718 lncRNA upstream 58878 37743793 ~ 37744215 (+) True G149857
TU202717 lncRNA upstream 63809 37738489 ~ 37739284 (+) True G149856
TU202697 lncRNA upstream 69111 37733772 ~ 37733982 (+) True G149852
TU202696 lncRNA upstream 73575 37729273 ~ 37729518 (+) True G149851
TU202682 lncRNA upstream 89686 37707327 ~ 37713407 (+) True G149847
TU202732 lncRNA downstream 48305 37863184 ~ 37863701 (+) True G149870
TU202733 lncRNA downstream 48549 37863428 ~ 37863701 (+) False G149870
XR_005641653.1 lncRNA downstream 70798 37885677 ~ 37887539 (+) True LOC120573164
XR_005641652.1 lncRNA downstream 70810 37885689 ~ 37887539 (+) False LOC120573164
TU202758 lncRNA downstream 145041 37959920 ~ 38028577 (+) True G149878
XM_039822926.1 mRNA upstream 170506 37613778 ~ 37632587 (+) True eno3
XM_039822927.1 mRNA upstream 170506 37613778 ~ 37632587 (+) False eno3
XM_039822928.1 mRNA upstream 170506 37617918 ~ 37632587 (+) False eno3
XM_039823046.1 mRNA upstream 201021 37594216 ~ 37602072 (+) True LOC120573353
XM_039823033.1 mRNA upstream 250807 37533275 ~ 37552286 (+) False LOC120573344
XM_039823161.1 mRNA downstream 23106 37837985 ~ 37839036 (+) True LOC120573434
XM_039823531.1 mRNA downstream 47291 37862170 ~ 37883336 (+) True mogat3a
XM_039822677.1 mRNA downstream 73281 37888160 ~ 37907366 (+) False zgc:153012
XM_039822676.1 mRNA downstream 73282 37888161 ~ 37907366 (+) True zgc:153012
XM_039822678.1 mRNA downstream 73283 37888162 ~ 37906970 (+) False zgc:153012
TU202665 other upstream 121984 37676995 ~ 37681109 (+) True G149843
TU202667 other upstream 121984 37676995 ~ 37681109 (+) False G149843
TU202671 other upstream 121984 37676995 ~ 37681109 (+) False G149843
TU202419 other upstream 232385 37567913 ~ 37570708 (+) True G149671
TU202405 other upstream 451249 37351075 ~ 37351844 (+) True G149657
TU202708 other downstream 28342 37843221 ~ 37848576 (+) False G149853
TU202808 other downstream 449558 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other downstream 449558 38264437 ~ 38351833 (+) False LOC120573406
TU202810 other downstream 449558 38264437 ~ 38351833 (+) False LOC120573406
TU202813 other downstream 449558 38264437 ~ 38351833 (+) False LOC120573406

Expression Profile