RNA id: TU202732


Basic Information

Item Value
RNA id TU202732
length 220
lncRNA type intronic
GC content 0.49
exon number 2
gene id G149870
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37863184 ~ 37863701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataacaatgaaatgctgcgttattgactttagaccaggtttttgttggtcaatggcgccatcacttcccgctgcctcaagatagcaatactcccagaatgcacctgaacacacctccctgtaagaccagaatgcacctgaacacacctccctgtaagaccagaatgcacctgaacacacctccctgtaagaccagaatgcacctgaacacacctccctgt

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202702 lncRNA upstream 11303 37803093 ~ 37851881 (+) True G149853
TU202710 lncRNA upstream 48305 37743174 ~ 37814879 (+) False G149853
TU202718 lncRNA upstream 118969 37743793 ~ 37744215 (+) True G149857
TU202717 lncRNA upstream 123900 37738489 ~ 37739284 (+) True G149856
TU202697 lncRNA upstream 129202 37733772 ~ 37733982 (+) True G149852
XR_005641653.1 lncRNA downstream 21976 37885677 ~ 37887539 (+) True LOC120573164
XR_005641652.1 lncRNA downstream 21988 37885689 ~ 37887539 (+) False LOC120573164
TU202758 lncRNA downstream 96219 37959920 ~ 38028577 (+) True G149878
TU202772 lncRNA downstream 111639 37975340 ~ 38008410 (+) False G149884
TU202775 lncRNA downstream 111639 37975340 ~ 38008410 (+) True G149884
XM_039823161.1 mRNA upstream 24148 37837985 ~ 37839036 (+) True LOC120573434
XM_039822926.1 mRNA upstream 230597 37613778 ~ 37632587 (+) True eno3
XM_039822927.1 mRNA upstream 230597 37613778 ~ 37632587 (+) False eno3
XM_039822928.1 mRNA upstream 230597 37617918 ~ 37632587 (+) False eno3
XM_039823046.1 mRNA upstream 261112 37594216 ~ 37602072 (+) True LOC120573353
XM_039822677.1 mRNA downstream 24459 37888160 ~ 37907366 (+) False zgc:153012
XM_039822676.1 mRNA downstream 24460 37888161 ~ 37907366 (+) True zgc:153012
XM_039822678.1 mRNA downstream 24461 37888162 ~ 37906970 (+) False zgc:153012
XM_039822679.1 mRNA downstream 47518 37911219 ~ 37952036 (+) True LOC120573166
XM_039822681.1 mRNA downstream 47518 37911219 ~ 37952036 (+) False LOC120573166
TU202708 other upstream 14608 37843221 ~ 37848576 (+) False G149853
TU202698 other upstream 48305 37803093 ~ 37814879 (+) False G149853
TU202665 other upstream 182075 37676995 ~ 37681109 (+) True G149843
TU202667 other upstream 182075 37676995 ~ 37681109 (+) False G149843
TU202671 other upstream 182075 37676995 ~ 37681109 (+) False G149843
TU202808 other downstream 400736 38264437 ~ 38351833 (+) False LOC120573406
TU202809 other downstream 400736 38264437 ~ 38351833 (+) False LOC120573406
TU202810 other downstream 400736 38264437 ~ 38351833 (+) False LOC120573406
TU202813 other downstream 400736 38264437 ~ 38351833 (+) False LOC120573406
TU202806 other downstream 483863 38347564 ~ 38351833 (+) False LOC120573406

Expression Profile