RNA id: TU202767


Basic Information

Item Value
RNA id TU202767
length 599
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G149881
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38171271 ~ 38292545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATactggacctggacctggaccaggaccaggacctgTAGGTGACTGACCTGGGCGTGTACTCCAGGTGAGAGTGGATCTGGTAGTACCAATCACCGTCTGCCAGCTCATCAGTGGAAGTGACATCAGAGGTGACTTCCTGTCCGTCTCTGGTCCACTTGACTCTGATGTGTTTGGGGTAGAAGTCGTAGACGCTGCAGACCAACATGGCCGAATGTTTACCACCAGAGGGCTCCGTAGAGCTCAGTCGGACATACGGCTCAGCtggaacacacaacacatggtCATCACATTATTCATCATGTCCTCCATTACAGCTCCTTCAGCTCAGACACAGCCCTTCATACACCACAGAGGGACATGCTGTCCTCTGATTGGTGCCTTTCACTTATGTCCCGCCCACTGGTTCTGATGGCTGACTGACAGATTTCACAGGAGCATTCTGGGAGAATCCCCCATTATAAAAACTGACATTAACAGTAGAAATGAGATCAggacattaaaataaatcaaactcTAAGCTCTAATGTTTAAATATAACACTAGTCATAATAATATGACTGTTCTCAGTAGATTTCATAATGAATAATCATTATAAT

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202800 lncRNA upstream 15918 38152222 ~ 38155353 (+) True G149902
TU202797 lncRNA upstream 28045 38141864 ~ 38143226 (+) True G149899
TU202758 lncRNA upstream 142694 37959920 ~ 38028577 (+) True G149878
TU202829 lncRNA downstream 30001 38322546 ~ 38323124 (+) True G149912
TU202846 lncRNA downstream 47349 38339894 ~ 38340425 (+) True G149925
TU202855 lncRNA downstream 91508 38384053 ~ 38384510 (+) True G149932
XR_005641717.1 lncRNA downstream 107796 38400341 ~ 38407337 (+) True LOC120573411
XR_005641716.1 lncRNA downstream 107796 38400341 ~ 38405866 (+) False LOC120573411
XM_039823099.1 mRNA upstream 65076 38064701 ~ 38106195 (+) True LOC120573389
XM_039823097.1 mRNA upstream 65076 38064702 ~ 38106195 (+) False LOC120573389
XM_039823124.1 mRNA upstream 107809 38035815 ~ 38063462 (+) True eif4e2rs1
XM_039823126.1 mRNA upstream 107809 38059023 ~ 38063462 (+) False eif4e2rs1
XM_039822680.1 mRNA upstream 221172 37911219 ~ 37950099 (+) False LOC120573166
XM_039823128.1 mRNA downstream 55111 38347656 ~ 38352838 (+) False LOC120573406
XM_039823127.1 mRNA downstream 55169 38347714 ~ 38352838 (+) False LOC120573406
XM_039823123.1 mRNA downstream 132332 38424877 ~ 38428658 (+) True LOC120573404
XM_039823122.1 mRNA downstream 159458 38452003 ~ 38456179 (+) True LOC120573403
XM_039823102.1 mRNA downstream 250573 38543118 ~ 38561745 (+) False LOC120573390
TU202708 other upstream 322695 37843221 ~ 37848576 (+) False G149853
TU202698 other upstream 356392 37803093 ~ 37814879 (+) False G149853
TU202665 other upstream 490162 37676995 ~ 37681109 (+) True G149843
TU202806 other downstream 55019 38347564 ~ 38351833 (+) False LOC120573406
TU202807 other downstream 55019 38347564 ~ 38351833 (+) False LOC120573406
TU202812 other downstream 55019 38347564 ~ 38351833 (+) False LOC120573406
TU202802 other downstream 59936 38352481 ~ 38358857 (+) False LOC120573406
TU202803 other downstream 59936 38352481 ~ 38358857 (+) False LOC120573406

Expression Profile