RNA id: TU202805


Basic Information

Item Value
RNA id TU202805
length 3901
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC120573406
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38264437 ~ 38358857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGTCCAGACCCTCCTTCCAGTCCGATGGTGTACACCAAAGAAGCCGTGGAGCTCCGAGAGAAGAACACCCTCATCTGTTATGTGACTGGTTTCTATCCTGCTCCTGTCATCTTCTCCTGGACAAAGAACGGAGAGAACGTCACCGAAGGAAGCAGCACCAACGTTCCCTACCCCAACAAAGATGGTTCCTTCAACCAGTTCTCCAGACTGGACTTCATCCCACAGCTGGGAGACATCTACAGCTGTACAGTCAACCATCTGGCCCTGGACCAGCCACTGACCAGGATCTGGggtcagacaactttatttacactcaCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGGATCTGGGGTCAGACAACATTTATTTACACTCACACTAAATACAATCAGCTCGTTAACCAACCACTGACCAGAATCTGGggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcTCACTAAATACAATCAGCTCATTAACCAACCACTGTCCAGAATCTGGggtcagacaactttatttacactcTCACTAAATACAATCAGCTCATTAACCAACCACTGACCAAAATTCGGggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctgggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccaggatctggggtcagacaactttatttacactcaCACTAAATACAATCAGCTCATTAACCAACCACTGACCAGAATCTGGGTCAGAACACTTTATTTACACTAACAAATACAGTCAGCTCATTAACCAACCACTGACCAGGATCTGGggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcaCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGAATCTGGGGTCAGAAAACTTTATTTACACTCTCACTAAATACAATCAGCTCATTAACCAACCACTGACCAGAATCTAGggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcaCACTAAAAATAAGCTCATTAACCAACCACTGACCAGAATCTGGggtcagacaactttatttacactcaCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGAATCTGGGTCAGACAACTTTATTACACTCTCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGGATCTGggtcagacaactttatttacactcacactagatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcaCAAATACAATCAGCTCATTAACCAATCACTGGCCAGAATCTGGggtcagacaactttatttacactcaCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGAATCTGGGTCAAACACTTTATTTACACTCACACTAAATACAATCAGCTCATTAACCAACCACTGACCAGAATCTGGggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcaCACTAAATACAATCAGCTCATTAACCAACCACTGACCAGAATCTGGGTCAGACAACTATTTATACTCTCACTAAATACAGTCAGCTCATTAACAACCACTGACCAGAATCTGGggtcagacaactttatttatactcTCACTAAATACAGTCAGCTCATTAACCAACCACTGACCAGAATCTGGGTtcagacaactttatttacactcaCACTAAATACAATCAGCTCATTAACTAATCACTGACCAGAATCTGGggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccaggatctggggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcCACTAGATACAATCAGCTCATTAACCAATCACTGACCAGAATCTGGggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccagaatctgggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccagaatctgggtcagacaactttatttatactcacactaaatacaatcagctcattaaccaaccactgaccaggatctggggtcagacaactttatttacactctcactaaatacaatcagctcattaaccaaccactgaccaggatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccaggatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttatactctcactaaatacaatcagctcattaaccaaccactgaccagaatctggggtcagacaactttatttacactcacactaaatacaatcagctcattaaccaaccactgaccagaatcagggtcagacaactttatttCACTCACACTAAATACAATCAGCTCATTAACCAACCACTGACCAGAATCTGGGGTCAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202846 lncRNA upstream 12056 38339894 ~ 38340425 (+) True G149925
TU202829 lncRNA upstream 29357 38322546 ~ 38323124 (+) True G149912
TU202767 lncRNA upstream 59936 38171271 ~ 38292545 (+) True G149881
TU202831 lncRNA upstream 63127 38287216 ~ 38289354 (+) True G149914
TU202763 lncRNA upstream 65570 38169476 ~ 38286911 (+) False G149880
TU202855 lncRNA downstream 25196 38384053 ~ 38384510 (+) True G149932
XR_005641717.1 lncRNA downstream 41484 38400341 ~ 38407337 (+) True LOC120573411
XR_005641716.1 lncRNA downstream 41484 38400341 ~ 38405866 (+) False LOC120573411
XR_005641719.1 lncRNA downstream 41484 38400341 ~ 38405866 (+) False LOC120573411
XR_005641718.1 lncRNA downstream 41484 38400341 ~ 38405863 (+) False LOC120573411
XM_039823113.1 mRNA upstream 99593 38229862 ~ 38252888 (+) True LOC120573398
XM_039823114.1 mRNA upstream 99593 38229862 ~ 38252888 (+) False LOC120573398
XM_039823099.1 mRNA upstream 246286 38064701 ~ 38106195 (+) True LOC120573389
XM_039823097.1 mRNA upstream 246286 38064702 ~ 38106195 (+) False LOC120573389
XM_039823126.1 mRNA upstream 289019 38059023 ~ 38063462 (+) False eif4e2rs1
XM_039823123.1 mRNA downstream 66020 38424877 ~ 38428658 (+) True LOC120573404
XM_039823122.1 mRNA downstream 93146 38452003 ~ 38456179 (+) True LOC120573403
XM_039823102.1 mRNA downstream 184261 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA downstream 184274 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA downstream 184274 38543131 ~ 38561745 (+) False LOC120573390
TU202810 other upstream 648 38264437 ~ 38351833 (+) False LOC120573406
TU202761 other downstream 94568 38453425 ~ 38456157 (+) False G149880
TU202765 other downstream 94568 38453425 ~ 38457596 (+) False G149880
TU203025 other downstream 147606 38506463 ~ 38521503 (+) True G150060
TU203058 other downstream 323474 38682331 ~ 38728091 (+) True G150081
TU203168 other downstream 521714 38880571 ~ 38883270 (+) True G150139

Expression Profile