RNA id: TU202809


Basic Information

Item Value
RNA id TU202809
length 456
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC120573406
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38264437 ~ 38358857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACACAGACAGGTCCAGgtctacagagagacagacaggttcaggtctacagagacagacaggttcaggtctacagagagacagacaggttcagGTCTACAGAGAGACTCAGACAGGTTCAGgtctacagagacacagacaggttcaggtctacagagagacagacaggttcagGTCTACAGAGACTCAGACAGGTTCAGGTCTACAGAGACTCAGACAGGTTCAGGTCTACAGAGACTCAGACAGGTTCAGGTCTACAGAGAGATGAagctgatgaagatgatgaagatgatgaagatgatggtggtcctggtcctggtcctctctggtctcctctgtgtctcagCAGACGAGTTTCATGAGGACCTTGCTATCGGCGGCTGTTCAGACTCTGATGGAGAGAACATGTATTCTCTGGATGGAGAAGAGACGTGGTACGCAGACTTCATCAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202800 lncRNA upstream 109084 38152222 ~ 38155353 (+) True G149902
TU202797 lncRNA upstream 121211 38141864 ~ 38143226 (+) True G149899
TU202758 lncRNA upstream 235860 37959920 ~ 38028577 (+) True G149878
TU202855 lncRNA downstream 32220 38384053 ~ 38384510 (+) True G149932
XR_005641717.1 lncRNA downstream 48508 38400341 ~ 38407337 (+) True LOC120573411
XR_005641716.1 lncRNA downstream 48508 38400341 ~ 38405866 (+) False LOC120573411
XR_005641719.1 lncRNA downstream 48508 38400341 ~ 38405866 (+) False LOC120573411
XR_005641718.1 lncRNA downstream 48508 38400341 ~ 38405863 (+) False LOC120573411
XM_039823113.1 mRNA upstream 11549 38229862 ~ 38252888 (+) True LOC120573398
XM_039823114.1 mRNA upstream 11549 38229862 ~ 38252888 (+) False LOC120573398
XM_039823099.1 mRNA upstream 158242 38064701 ~ 38106195 (+) True LOC120573389
XM_039823097.1 mRNA upstream 158242 38064702 ~ 38106195 (+) False LOC120573389
XM_039823126.1 mRNA upstream 200975 38059023 ~ 38063462 (+) False eif4e2rs1
XM_039823123.1 mRNA downstream 73044 38424877 ~ 38428658 (+) True LOC120573404
XM_039823122.1 mRNA downstream 100170 38452003 ~ 38456179 (+) True LOC120573403
XM_039823102.1 mRNA downstream 191285 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA downstream 191298 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA downstream 191298 38543131 ~ 38561745 (+) False LOC120573390
TU202708 other upstream 415861 37843221 ~ 37848576 (+) False G149853
TU202698 other upstream 449558 37803093 ~ 37814879 (+) False G149853
TU202665 other upstream 583328 37676995 ~ 37681109 (+) True G149843
TU202802 other downstream 648 38352481 ~ 38358857 (+) False LOC120573406
TU202803 other downstream 648 38352481 ~ 38358857 (+) False LOC120573406
TU202805 other downstream 648 38352481 ~ 38358857 (+) True LOC120573406
TU202761 other downstream 101592 38453425 ~ 38456157 (+) False G149880
TU202765 other downstream 101592 38453425 ~ 38457596 (+) False G149880

Expression Profile