RNA id: XR_005641715.1


Basic Information

Item Value
RNA id XR_005641715.1
length 276
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120573410
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38457241 ~ 38482190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaatctttcagaatagaatatacgcacagttttataaatgaggcccctggaccATCTGCTGGACCGACTCAACTCCTGATTCTCTGATGATCTGGACTCTGATACTCAGCTGGTCTGAACTTGATCCAGGACTGTGGTGTTACTCTGACAGTCCTGGACCAGGTTTAGTCTGGACTCTGGTGTATCGCAGTTGCATCTGAACTCTGCTTCATCTACATGTGATATGATTCTTTACTGTGTGAAATCAATATttttcaTCCACTTATATCCACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202760 lncRNA upstream 1084 38285838 ~ 38456157 (+) True G149880
XR_005641717.1 lncRNA upstream 49904 38400341 ~ 38407337 (+) True LOC120573411
XR_005641716.1 lncRNA upstream 51375 38400341 ~ 38405866 (+) False LOC120573411
XR_005641719.1 lncRNA upstream 51375 38400341 ~ 38405866 (+) False LOC120573411
XR_005641718.1 lncRNA upstream 51378 38400341 ~ 38405863 (+) False LOC120573411
TU203038 lncRNA downstream 3316 38483703 ~ 38484973 (+) True G150066
TU203026 lncRNA downstream 6188 38486575 ~ 38518330 (+) False G150060
TU203028 lncRNA downstream 11050 38491437 ~ 38511443 (+) False G150060
TU203043 lncRNA downstream 16149 38496536 ~ 38497266 (+) True G150068
TU203050 lncRNA downstream 105081 38585468 ~ 38585726 (+) True G150075
XM_039823122.1 mRNA upstream 1062 38452003 ~ 38456179 (+) True LOC120573403
XM_039823123.1 mRNA upstream 28583 38424877 ~ 38428658 (+) True LOC120573404
XM_039823128.1 mRNA upstream 104403 38347656 ~ 38352838 (+) False LOC120573406
XM_039823127.1 mRNA upstream 104403 38347714 ~ 38352838 (+) False LOC120573406
XM_039823113.1 mRNA upstream 204353 38229862 ~ 38252888 (+) True LOC120573398
XM_039823102.1 mRNA downstream 62731 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA downstream 62744 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA downstream 62744 38543131 ~ 38561745 (+) False LOC120573390
XM_039823100.1 mRNA downstream 62745 38543132 ~ 38561744 (+) True LOC120573390
XM_039823106.1 mRNA downstream 105685 38586072 ~ 38589499 (+) True LOC120573393
TU202761 other upstream 1084 38453425 ~ 38456157 (+) False G149880
TU202802 other upstream 98384 38352481 ~ 38358857 (+) False LOC120573406
TU202803 other upstream 98384 38352481 ~ 38358857 (+) False LOC120573406
TU202805 other upstream 98384 38352481 ~ 38358857 (+) True LOC120573406
TU202807 other upstream 105408 38347564 ~ 38351833 (+) False LOC120573406
TU203025 other downstream 26076 38506463 ~ 38521503 (+) True G150060
TU203058 other downstream 201944 38682331 ~ 38728091 (+) True G150081
TU203168 other downstream 400184 38880571 ~ 38883270 (+) True G150139
TU203179 other downstream 436950 38917337 ~ 38924025 (+) False LOC120572657
TU203181 other downstream 455021 38935408 ~ 38936600 (+) True G150148

Expression Profile