RNA id: TU203058


Basic Information

Item Value
RNA id TU203058
length 5652
RNA type TUCP
GC content 0.35
exon number 3
gene id G150081
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38682331 ~ 38728091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAGTCATACAGAAATCAATCAACCCTTTGAAGGCATTTAGTGGTTTTAAACATCAAGCTTCTATAAGAAAATACAATTCATGAAAGATGGCAGAAGTGAGTTATTTTGTTACATTCATCGCAGCAGATTTCTGAATATATGAGTTTAATcgtgtcatttaaaaaatgctgAGGGAGATATTTCGAGAATGGAGAGAAGAGAACTAATGtgagaaaatgttaaaaagttGAAGTAGTTCCACAGGGAAACGAAAAAGCACTCGTGAAAAAAAACGTGGAAATCGAACGAATTACAGAGCTTAAGTCTTCGTAGCTTTTGTTCTGacatttttggcactttttccgaCGATATTGGCGCTTTTTTCAATGGTTTAGCTGCTTCCCTCCCCCAAAAATGTGCTTTTCCCCAaagtttttacatatttttcaacattttttgtgcttttttttcaatgctttagctgctttttgcaacatttatcatgttttttctgctttttgtgactttttccaacctttttaacactttttccgacattttttgctctttttatcaatatttttggAGCTTTCTGcaacatttttgatgctttttgcaaaatttttgatgcttttttttcttcagttttttgacattttcagcgaTTCTTTTTcgatattttgtcactttttccgacatttttggcCCTCTTTGCGAGTTATTGGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAgcgtttttttcaaaatgtttggcacttactgcaacatttttgatgctttttgcaacatttttgatgctttttttcagttttttgacattttcagcgaTTCTTTTTcgatattttgtcactttttccgacatttttggcCCTCTTTGCGAGTTATCGATGCTTTTACAGATGCTTTATTTGCTTTTTCCCAAAAGAATAGcgttttttataaaatgtttggCACTTACTGcaacatttttgatgcttttttaaattttttgacattttcagcgaTTTGTTTTcgatattttgtcactttttccaacatttttggcCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAGcgtttttttctaaatgtttgGCACTTTCTGcaacatttttgatgcttttttttcctacgtttttttttttttactttttccgacatttttatCGATTTTTTGGGCGTTTTTTTTCCCCgacgttttatcactttttccgatgtatCCAGGCACCCAAGGTCCTGTGTTTTGACATCCACCCACAGccctaaaagaagaaaaaaacttggAAATCATAAGAACTACAGCGCACAACTCTTCGTAGCTGCTGGAACGTacggttcatgagaacaggctgtctGGGTCGTGTTATTTTTGCGGTTGCATGAAGAATTATCTGGAAATTCTCCACAAAAGACAGCGTTCCTCCAACTAATTAACACAAAGTCCTGCATAAATATTTCGTGGGAATCACAGTGTTGGCGTTTTCGGGGAATATGCAGAACAGATGTGGATCTTAATCATTAAGATCTGAGCTTTtgggcttttatttattttttttgtatttttatgtaaaCAGGAAATGAGCTGGAATTTACAAGCCTTGATTTTAACACTTCGGACCACTTCTGTGTCATCTTTAAAATCCCACATTCAAGCTTTTATTATCCCACGTTGTGTGATTGATTTTTACTGGCCTGGTTTTACACCCGCGGAAGTCTGCTTGCAATAGACGTCTGGCAGCGTTTGCGTCCTCGTTAATTCTGGTTTGACTGAGTAAAGACTCTCGgtactgtgtgtgttgagaCGGTCGCGTTCTTAATGTGGTTTCTGTCGGTGCCTGGGCTCACATGTCAGCAAACGCTGGGattaaatatgtatatttaaTCATTTAAGTTTCCCAAAAAGTCCCCAAAGAGGTCAAAAGTCAAAGGTTTAGACTCTAAACTCGAGGCCAGAGGGGCCAAATCTGATCCGGCCCACAagaaacgttggaaaaagcaccaatatttcaaaaaaatatttcaatattcaaatattcaaaaaaatattcaaaaaaatattcaaaaaaatatttcaatattcaaatattcaaaaaaaaattcaaaaaaaaattctaaaaattatatcaatattcaaatatttcaaaaatatttcaaaaataattttttgaatttttttctaggctttagctgcttttttccccaaacaatgtgtttttttttaaatggttttgtcacttttttcaacattatttatgcttttccaaagttttttcaacatttttggcacTTTATTAGATGCTATAGCTaggtttttcaaaatttttgatgctttttttcgacgtttttgatATTGATTCTGaaatttttgccattttttttcagtgctttAGCTGCTTTTTTCGAGGTATTTTATGCTTAAGCcgctttttcaaaaatattagtgctttttccaacgtttttgccgcttttttgaatttttttctaTGCGTTAGCTGCTTTTTCCcaaacaatgtgttttttttaaatggtttgtcacttttttcaacattatttATGCTTTTCcaaaattttttcaacatttttggcacTTTATTGGATGCTATAGgtacttttttcaaaattttggatgcttttttttcgacgtttttgatATTGATTCTGaaatttttgccactttttttcaGTGCTTTAGCTGCTTTTTTCGAGACATTTTTGGCCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTGTTCCCAAAAGAATAgcgtttttttccaaaatttttgGCACTTACTGcaacatttttttcagtttttttcagttttttgacattttcagcgaTTTTGTTTTcgatattttgtcactttttccgaaatTTTTGGCCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTGTTCCCAAAAGAATAGCGTTTTCTTTCCAAATTTTTGGCACTTACTGCaacattttttctgtttttttctgttttttgacattttcagcgaTTTTGTTTTcgatattttgtcactttttccgaaatTTTTGGCCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTTTTTCCAAAAGAATAgcgtttttttcaaaaatgttggcACTTTCTGcaacatttttgatgctttttttcctacgttttttttttttttttacttttcccgacatttttggCGATTTTTTTGACAGACGTACCCAGGCACCCAAAATCCTGTGTTTTGACGCCCACGTTGGGGTGcacacagcccccccccccaaaaaaaacaaaacatggaaaTCATACGATTTGAGACGATGACTCAGCAGCGCTGGAAGAAGTCCTgacaccacactgtaaaaaatacagttgcacaccacactgtaaaaaatacagttACAAGTTAAAATCCTGCAGTGGCAATGGGAGGATTGTTTTTAACGTTTAATACTACATTTCCCTGATGGTACCAtcagacttttactgaagtaacgatttcaatgcaggactgttacttgtaacggagtattttttacagtgtggtataagtactgttttttccccccagaaaAAATTCTGTTTCCCAACGTTTTTgcatatttttcaacattttatgaGCTGTTTTTTCAATGCTATAGCTGCTTTTTTTCAACAGTTTTGGCACTTTCTGCAACATTTTTGATGCATTTTGCAACATTTTCTATGCTTTTTCTAcgtttttttgactttttccgacatttttggcaactttttcgacatttgTGGCACTTTCctcgatgtttttgtcatttttccctAAGTTTTTGGCCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAGCGTTTTTGTTCAAAATTTTTGGCACTTACTGCaacattttttatgctttttgcaacattttttatgctttttttcagtttattgacattttcagtgatttttttctcgatattttgtcactttttcctgacatttttggCCCTCTTTGCGAGTTATCTGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAgcgttttttttcaaaatttttggcactttctgcaacatttttgatgctttttgcaacatttttgatgttttttgcaacatttttgatgctttttgcaACATTGCAACACACAACAGTAAAAAATACAGTTACAAGTTAAAATCCTGCAGTGGCAATGGGAGGATTGTTTTTAACGTTTAATACTACATTTCCCTGATGGTACCAtcagacttttactgaagtaacgatttcaatgcaggactgttacttgtaacggagtattttttacagtgtggtataagtactgttttttccccccagaaaAAATTCTGTTTCCCAACGTTTTTgcatatttttcaacattttatgaGCTGTTTTTTCAATGCTATAGCTGCTTTTTTTCAACAGTTTTGGCACTTTCTGCAACATTTTTGATGCATTTTGCAACATTTTCTATGCTTTTTTCTAcgtttttttgactttttccgacatttttggcaactttttcgacatttgTGGCACTTTCctcgatgtttttgtcatttttcccgAAGTTTTTGGCCCTCTTTGCGAGTTATCGGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAGCGTTTTTGTTCAAAATTTTTGGCACTTACTGCaacattttttatgctttttgcaacattttttatgctttttttcagtttattgacattttcagTGATTTTTTCTcgatattttgtcactttttccgacatttttggcCCTCTTTGCGAGTTATCTGTGCTTTTACAGATGCTTTAGTTGCTTTTTCCCAAAAGAATAgcgttttttttcaaaatttttggcactttctgcaacatttttgatgctttttgcaacatttttgatgctttttgcaACATTGCAACACacaactgtaaaaaatacagttacaaattaaagTCCTGCAGTGGCAATGGGAGGATTGTTCTTAACGTTAACTACATTTCCCTGATGGTACCGTCAGAATTTTACTGAAGTAAcgttttcactgcaggactgtatgtttttttgtttttacagcagtgtgtgtactagtattagtacttttactgcagtaatgaAGGATGTGAATACTTCTCCTTGCTGCGCAGCGACTGCGGCTGCAGCTTCAGTCTGTTTGCAATTAACGGATAAACAGAGCGCAGGCCAGAGAGCCTTTTGGGTTTTTGGTGGAAGGAGACGCACATTCCTGCGGGGTGCTGAACACCGGAGCCGGGTCGCCTCGGGGTGAAACCAGCCCgcgccccccccacccacccactctCGGTTTCCCACCTGAGGGCTGCGAGCCTCTGATGTTTGGCAGAAcattgggtgtgtgtgtgtctgtgtgtttgagtgtgtgtctgtgagtctgtgtacgtgtctctgtgtgtgtttgtgtgtttgagtgtgtgtctgtgagtctgtgtacgtgtgtgtatatgagtgtgtctgtatgtatgtctgtgtgtgcgtctgtctctgtgtgtgtctgcgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203066 lncRNA upstream 67523 38614535 ~ 38614808 (+) True G150084
TU203050 lncRNA upstream 96605 38585468 ~ 38585726 (+) True G150075
TU203030 lncRNA upstream 164001 38463142 ~ 38518330 (+) False G150060
TU203026 lncRNA upstream 164001 38486575 ~ 38518330 (+) False G150060
TU203028 lncRNA upstream 170888 38491437 ~ 38511443 (+) False G150060
TU203107 lncRNA downstream 34524 38762615 ~ 38763280 (+) True G150114
TU203098 lncRNA downstream 37048 38765139 ~ 38765851 (+) True G150105
TU203111 lncRNA downstream 50391 38778482 ~ 38778876 (+) True G150118
TU203118 lncRNA downstream 71026 38799117 ~ 38836167 (+) True G150123
TU203125 lncRNA downstream 72570 38800661 ~ 38807057 (+) True G150124
XM_039823106.1 mRNA upstream 92832 38586072 ~ 38589499 (+) True LOC120573393
XM_039823102.1 mRNA upstream 120586 38543118 ~ 38561745 (+) False LOC120573390
XM_039823103.1 mRNA upstream 120586 38543131 ~ 38561745 (+) False LOC120573390
XM_039823101.1 mRNA upstream 120586 38543131 ~ 38561745 (+) False LOC120573390
XM_039823100.1 mRNA upstream 120587 38543132 ~ 38561744 (+) True LOC120573390
XM_039823171.1 mRNA downstream 48362 38776453 ~ 38791913 (+) True LOC120573446
XM_039823173.1 mRNA downstream 48362 38776453 ~ 38791913 (+) False LOC120573446
XM_039823172.1 mRNA downstream 48362 38776453 ~ 38788521 (+) False LOC120573446
XM_039821976.1 mRNA downstream 187328 38915419 ~ 38930312 (+) True LOC120572657
XM_039823622.1 mRNA downstream 223951 38952042 ~ 38955968 (+) True LOC120573707
TU203025 other upstream 160828 38506463 ~ 38521503 (+) True G150060
TU202765 other upstream 224735 38453425 ~ 38457596 (+) False G149880
TU202761 other upstream 226174 38453425 ~ 38456157 (+) False G149880
TU202802 other upstream 323474 38352481 ~ 38358857 (+) False LOC120573406
TU203168 other downstream 152480 38880571 ~ 38883270 (+) True G150139
TU203179 other downstream 189246 38917337 ~ 38924025 (+) False LOC120572657
TU203181 other downstream 207317 38935408 ~ 38936600 (+) True G150148
TU203192 other downstream 355831 39083922 ~ 39090869 (+) False LOC120572658

Expression Profile