RNA id: TU203137


Basic Information

Item Value
RNA id TU203137
length 926
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G150131
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38858593 ~ 38937135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGAGTGTGTCAGGTTtgtaaaactgaacatttttaCACAACCGGAGGTAAGAAAACTTCTTTAAAACACACGAGTAAAAAACACACAGTAAGAATCTCACAGCGTCACgataatacaaaatactgaaTTAAATATCTCCCTGTAAAAAGTACTCATAAAAACAGTTATAGTACAGTTAGTAGTacgtgtgtgtatagtgtgtataaTGCCGAGCCGTTTAATGTTGTCGTTTTGGGGTTTAAAAAGCTGCTGAGAACGTCgcttatttgacattttaaattcaaaagACAAAAGCATCTTCCAgatttaaaacaataataaaataaaaaccacattTCCCATCAGCCCCGTCACATcctgcccccccccacccccatgtGAATTATACCCACGTCTCTAcattttatatacacacacaaaacgaaGTATtttcctgttaaaaaaaaaacaaaaaacaaaagtaaaaaaaggtgCCTGGGTTGCTCccttggtagagcgggcgcgcCCATATGcaagaggctcagtcctcaacgcagcggctcAGGGTtagagtccgacctgcggccatttgctgcattctctctctccctctctttacaGCCATCAATTTAATAATTAGCTTTTAAAGTTCTTGTAAAATCAAatctatctctctccctcttcctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgtg

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203118 lncRNA upstream 35269 38799117 ~ 38836167 (+) True G150123
TU203152 lncRNA upstream 44808 38822612 ~ 38826628 (+) True G150132
TU203125 lncRNA upstream 64379 38800661 ~ 38807057 (+) True G150124
TU203111 lncRNA upstream 92560 38778482 ~ 38778876 (+) True G150118
TU203098 lncRNA upstream 105585 38765139 ~ 38765851 (+) True G150105
TU203188 lncRNA downstream 116080 39053215 ~ 39055869 (+) True G150153
TU203198 lncRNA downstream 163601 39100736 ~ 39102011 (+) True G150161
XM_039823171.1 mRNA upstream 79523 38776453 ~ 38791913 (+) True LOC120573446
XM_039823173.1 mRNA upstream 79523 38776453 ~ 38791913 (+) False LOC120573446
XM_039823172.1 mRNA upstream 82915 38776453 ~ 38788521 (+) False LOC120573446
XM_039823106.1 mRNA upstream 281937 38586072 ~ 38589499 (+) True LOC120573393
XM_039823101.1 mRNA upstream 309691 38543131 ~ 38561745 (+) False LOC120573390
XM_039823622.1 mRNA downstream 14907 38952042 ~ 38955968 (+) True LOC120573707
XM_039821977.1 mRNA downstream 136223 39073358 ~ 39090901 (+) True LOC120572658
TU203058 other upstream 143345 38682331 ~ 38728091 (+) True G150081
TU203025 other upstream 349933 38506463 ~ 38521503 (+) True G150060
TU202765 other upstream 413840 38453425 ~ 38457596 (+) False G149880
TU202761 other upstream 415279 38453425 ~ 38456157 (+) False G149880
TU202805 other upstream 512579 38352481 ~ 38358857 (+) True LOC120573406
TU203192 other downstream 146787 39083922 ~ 39090869 (+) False LOC120572658

Expression Profile