RNA id: TU203172


Basic Information

Item Value
RNA id TU203172
length 506
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G150140
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38874653 ~ 38875207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGTCCGTgcgcctcctctcctccctcggcgtctctcctctccttcacctcctctcctccctcggcgtctctcctctccttcacctcctctcctccctcggcgtctctcctctccttcacctcctctcctccacctcctctcctccctcagcctctctcctctccttcaccTCCTCccctccctcagcctctctcctctccttcacctcctctcctccctcagcctctctcctctccttcaccTGGCCCATGCGTCTCTTCACCTCCTGCAgcagctcctccctcctccGACGCTCGGCGTAGCGCTCCACGCGCTGCGCCTCCTCCGCCTCCTTCTCCTGCAGCAGCGAGTGGAGGAACGCCGCGCTCACCTGCACACGGGTTCAAAAGGTCACACGGCTACACACTTGAAATATTTCGActtttatatttgaaatatttcaactttttcaCTTGAAATATTACGAATTTTACACTTGAAATATTACGAATTTTTCACTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203118 lncRNA upstream 38486 38799117 ~ 38836167 (+) True G150123
TU203152 lncRNA upstream 48025 38822612 ~ 38826628 (+) True G150132
TU203125 lncRNA upstream 67596 38800661 ~ 38807057 (+) True G150124
TU203111 lncRNA upstream 95777 38778482 ~ 38778876 (+) True G150118
TU203098 lncRNA upstream 108802 38765139 ~ 38765851 (+) True G150105
TU203135 lncRNA downstream 28189 38903396 ~ 38906362 (+) True G150130
TU203188 lncRNA downstream 178008 39053215 ~ 39055869 (+) True G150153
TU203198 lncRNA downstream 225529 39100736 ~ 39102011 (+) True G150161
XM_039823171.1 mRNA upstream 82740 38776453 ~ 38791913 (+) True LOC120573446
XM_039823173.1 mRNA upstream 82740 38776453 ~ 38791913 (+) False LOC120573446
XM_039823172.1 mRNA upstream 86132 38776453 ~ 38788521 (+) False LOC120573446
XM_039823106.1 mRNA upstream 285154 38586072 ~ 38589499 (+) True LOC120573393
XM_039823101.1 mRNA upstream 312908 38543131 ~ 38561745 (+) False LOC120573390
XM_039821976.1 mRNA downstream 40212 38915419 ~ 38930312 (+) True LOC120572657
XM_039823622.1 mRNA downstream 76835 38952042 ~ 38955968 (+) True LOC120573707
XM_039821977.1 mRNA downstream 198151 39073358 ~ 39090901 (+) True LOC120572658
TU203058 other upstream 146562 38682331 ~ 38728091 (+) True G150081
TU203025 other upstream 353150 38506463 ~ 38521503 (+) True G150060
TU202765 other upstream 417057 38453425 ~ 38457596 (+) False G149880
TU202761 other upstream 418496 38453425 ~ 38456157 (+) False G149880
TU202805 other upstream 515796 38352481 ~ 38358857 (+) True LOC120573406
TU203168 other downstream 5364 38880571 ~ 38883270 (+) True G150139
TU203179 other downstream 42130 38917337 ~ 38924025 (+) False LOC120572657
TU203181 other downstream 60201 38935408 ~ 38936600 (+) True G150148
TU203192 other downstream 208715 39083922 ~ 39090869 (+) False LOC120572658

Expression Profile