Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006821 |
| length | 1356 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 8 |
| gene id | XLOC_003478 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25504215 ~ 25519837 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0045670 | regulation of osteoclast differentiation | biological_process |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-010919-3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within humoral immune response; positive regulation of transcription, DNA-templated; and regulation of osteoclast differentiation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; ionocyte; lens placode; polster; and sensory system. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human TFE3 (transcription factor binding to IGHM enhancer 3). |
| ensembl_id | ENSDART00000011250 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006816 | lncRNA | upstream | 25892 | 25481107 ~ 25482237 (+) | False | XLOC_003476 |
| TCONS_00006818 | lncRNA | upstream | 25892 | 25481115 ~ 25482237 (+) | True | XLOC_003476 |
| TCONS_00008402 | lncRNA | upstream | 249132 | 25256812 ~ 25258997 (+) | False | XLOC_003467 |
| TCONS_00008615 | lncRNA | upstream | 249132 | 25257132 ~ 25258997 (+) | False | XLOC_003467 |
| TCONS_00006796 | lncRNA | upstream | 281203 | 25212540 ~ 25226926 (+) | True | XLOC_003466 |
| TCONS_00006823 | lncRNA | downstream | 28193 | 25547854 ~ 25548546 (+) | True | XLOC_003479 |
| TCONS_00008616 | lncRNA | downstream | 309709 | 25829370 ~ 25830337 (+) | True | XLOC_003487 |
| TCONS_00008617 | lncRNA | downstream | 668856 | 26188517 ~ 26196145 (+) | True | XLOC_003489 |
| TCONS_00008618 | lncRNA | downstream | 706421 | 26226082 ~ 26234069 (+) | True | XLOC_003490 |
| TCONS_00006845 | lncRNA | downstream | 876252 | 26395913 ~ 26398030 (+) | False | XLOC_003492 |
| TCONS_00006819 | mRNA | upstream | 5638 | 25485774 ~ 25502491 (+) | True | XLOC_003477 |
| TCONS_00006815 | mRNA | upstream | 24923 | 25481046 ~ 25483206 (+) | False | XLOC_003476 |
| TCONS_00006813 | mRNA | upstream | 28092 | 25477643 ~ 25480037 (+) | False | XLOC_003475 |
| TCONS_00006812 | mRNA | upstream | 32726 | 25472758 ~ 25475403 (+) | True | XLOC_003474 |
| TCONS_00006811 | mRNA | upstream | 32855 | 25459697 ~ 25475274 (+) | False | XLOC_003474 |
| TCONS_00006822 | mRNA | downstream | 20037 | 25539698 ~ 25550845 (+) | False | XLOC_003479 |
| TCONS_00006824 | mRNA | downstream | 40411 | 25560072 ~ 25576199 (+) | False | XLOC_003480 |
| TCONS_00006825 | mRNA | downstream | 40434 | 25560095 ~ 25560828 (+) | False | XLOC_003480 |
| TCONS_00006826 | mRNA | downstream | 40971 | 25560632 ~ 25576198 (+) | True | XLOC_003480 |
| TCONS_00006827 | mRNA | downstream | 64289 | 25583950 ~ 25615084 (+) | False | XLOC_003481 |
| TCONS_00006817 | other | upstream | 25159 | 25481107 ~ 25482970 (+) | False | XLOC_003476 |
| TCONS_00006814 | other | upstream | 29711 | 25477743 ~ 25478418 (+) | True | XLOC_003475 |
| TCONS_00006802 | other | upstream | 205572 | 25296376 ~ 25302557 (+) | False | XLOC_003469 |
| TCONS_00006788 | other | upstream | 380267 | 25096197 ~ 25127862 (+) | False | XLOC_003464 |
| TCONS_00006785 | other | upstream | 467492 | 25038273 ~ 25040637 (+) | True | XLOC_003461 |
| TCONS_00006838 | other | downstream | 558286 | 26077947 ~ 26078061 (+) | True | XLOC_003488 |
| TCONS_00006853 | other | downstream | 1084950 | 26604611 ~ 26614587 (+) | False | XLOC_003495 |
| TCONS_00006865 | other | downstream | 2000795 | 27520456 ~ 27520573 (+) | True | XLOC_003503 |
| TCONS_00006890 | other | downstream | 3832440 | 29352101 ~ 29352221 (+) | True | XLOC_003521 |
| TCONS_00006893 | other | downstream | 4047086 | 29566747 ~ 29571528 (+) | True | XLOC_003523 |
