RNA id: XM_039821425.1


Basic Information

Item Value
RNA id XM_039821425.1
length 1634
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120572220
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6221971 ~ 6231297 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaaagaaagagacatctTACATCTTGAGATTGGTCAACTTCCTGTGCTGCATCAAAAGTGTGACAGGGGTATAAGGGTGTCAGCATGCTGTGgtgacaggcacacacacactgctcttcCGCTGGATCTTCACCCTCTTTTTGATCATCCAACAGGTCATTATGCCCACCAACGCCTCCGTTGTCTGCAACATCACCACCAACGCCTCCGTTGCCTGCAACAGCAGCAGACAACCTGACGTCTTCCATGTGTGCATGTActcctttattttcattctgGGTCTCGTTTTTAATGTCCTGGCACTGGTCTTTTTCTGCTGTCAAACCAAATCCAGATCGCAAACCATTGTCTACATGACTAACCTGGCCTTAGCAGATGTGCTGCTCACCCTCACACTGCCCATGAGGATCTATTACCATCTAGGCTATTGTGGCCTTCCTGACCTGCTGTGTGAAGTCCTTGGTTTGGTCCTGAAGGCCAACATGTATGGGAGCATCTTCCTTCTCACGTGCATGTGCTTTGACCGTTGCATGGCCGTCTCCTTCCCTATGTCATCTCGTGTCCAGGCAGGGAGAAAGAAAGCGCCGCTGGTTTGCCTTGGAATATGGATGCTCACCTTCGGGGCCAGCTTGCCCATCTACATTAAGCAAACAAACGTGATCCATGATGAGTATTGTTTTGACAGATTTCCGGTCTTAGCCACAAAGCCAGTGGTGGTTGTACCCACTCTGTTTGTGGGGTTTGGGATCCCGCTAGTAATCATGCTGATCTGTTCCTGGGGTTTGGTCCGTGCTGTCCGACGAAGCTCAGTGGCCCAGACCAACCTGGTGGACAGCAGAAAGATCCAGAGGATGATTGCCGCCAGCCTCTTCATTTTCCTACTCAGCTTCCTCCCTTACCACGCCACCCTGGGTCTACTCTCTGTGTATGGAGAAAATACACCATCCCCAATGAAGGCTGCATACCGCTACAGCCTAATGTTGGCATGTCTCAACTCAGTACTAGATCCTATTGCGTACTACTTCACCACGGACACCTTCAGGAGGAACATAGACATAGGTGCTGTTTGGAGGATGTTTCCTTTGAATAGTCAAAGTTCTGATGTGAACAACAGGAGCAATATGCATAACAGCTAAAAGACTGCTGGAGAACCACCCAACAGACACTGCCATCCAACAAACTCCAAGGCCGACTGTCAACAGCACAACCACTTTTAACATTAAGTTGGCAGATTTCATGTTTCCAATGAACATATTCCGCCTGCAATCTTCTGCAGTTTGTAGGGTTCAGTTTGAGGTATACTGTTTAACCCAGACAGCGATTAAATATGTAACCCTCCCTCAAAAGAACCATTCCATACTTCACCACAGTCCATGGCGGTGCCACCACACAAAAACGTCCGCCCTCTGGAGTGTCCACAAGCCAAAATATTGATTTAGCCGAACAACTATGTAttgttaaatattaattttgattgtttttgtacAATTATACATGTATTTTCTATGGTAGATGCATTTTTCAAGTCCATCTGGAAAAGcgttaaaggtattgtggaggattttctttttccgggtggatcatcaagactattggtcctcctagttgtcaatcattctggcgctatgttta

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191007 lncRNA downstream 21267 6199308 ~ 6205730 (-) False gal3st4
TU190999 lncRNA downstream 69584 6156052 ~ 6157413 (-) True G141601
TU190837 lncRNA downstream 234770 5989895 ~ 5992227 (-) True G141470
TU190834 lncRNA downstream 255610 5970935 ~ 5971387 (-) True G141468
TU190833 lncRNA downstream 256384 5969951 ~ 5970613 (-) True G141467
TU191019 lncRNA upstream 34143 6265440 ~ 6266025 (-) True G141612
TU191020 lncRNA upstream 34854 6266151 ~ 6266583 (-) True G141613
TU191040 lncRNA upstream 77601 6308898 ~ 6309895 (-) False sox19b
TU191049 lncRNA upstream 144701 6375998 ~ 6378372 (-) False tbc1d14
TU191105 lncRNA upstream 224642 6455939 ~ 6511995 (-) True G141667
XM_039823018.1 mRNA downstream 6737 6186311 ~ 6220260 (-) False gal3st4
XM_039823017.1 mRNA downstream 6737 6186311 ~ 6220260 (-) False gal3st4
XM_039823016.1 mRNA downstream 6739 6186311 ~ 6220258 (-) False gal3st4
XM_039823015.1 mRNA downstream 21211 6186311 ~ 6205786 (-) True gal3st4
XM_039823013.1 mRNA downstream 21214 6177921 ~ 6205783 (-) False gal3st4
XM_039821509.1 mRNA upstream 6276 6237573 ~ 6243669 (-) True tm4sf21b
XM_039823555.1 mRNA upstream 78162 6309459 ~ 6315817 (-) True sox19b
XM_039822037.1 mRNA upstream 100391 6331688 ~ 6340737 (-) True eif4a1a
XM_039822036.1 mRNA upstream 112332 6343629 ~ 6361111 (-) True senp3b
XM_039823095.1 mRNA upstream 134674 6365971 ~ 6367776 (-) True LOC120573386
XR_005641401.1 other downstream 191 6221971 ~ 6226806 (-) False LOC120572220
unassigned_transcript_683 other downstream 198075 6028841 ~ 6028922 (-) True trnas-uga_22
unassigned_transcript_681 other downstream 269865 5957051 ~ 5957132 (-) True trnal-aag_6
TU190760 other downstream 383851 5743559 ~ 5843146 (-) False G141439
XR_005641774.1 other upstream 104197 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 105324 6336621 ~ 6336759 (-) True LOC120573735
TU191048 other upstream 122167 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other upstream 138401 6369698 ~ 6371093 (-) False LOC120572256
TU191399 other upstream 1550647 7781944 ~ 7787595 (-) False fcer1g

Expression Profile