RNA id: XM_039821433.1


Basic Information

Item Value
RNA id XM_039821433.1
length 1481
RNA type mRNA
GC content 0.48
exon number 7
gene id rtn3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4447409 ~ 4479287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTTACCGCATTTGTGCAGTTGCTTTGAAACTACAGTAAAATGGATCCAATGACTCAGTCCGCCCAGATATCATCGTCGCAAGGGCTTGCCGATGGACAAAATTCTGCTGCCAAAGAATCAAAGCTATCCGTTAAGGATCTGATCCATTGGCGAGACCCCAAGAAGTCGGGCTTGGTGTTTGGGCTgtccatgctgctgctgctgtcgctGGCAGCCTTCAGTGTCATCAGCGTGGCCTCCTACCTGCTGCTGGCCCTGCTCTGTGTCACCATCACCTTCCGCATCTACAAGTCTGTCGTCCAGGCAGTGCAGAAGTCCGGCGAGGGACACCCCTTCAAaACACTGATAGATAAGGATGTCAGCGTACCCCCAGAGACTTTCCGCAAGCACGTGGACGCCAGTCTGACCTACATCAACCGAGCCCTGAAGCAGATGAGCCGCCTCTTCCTGGTCGAGGACCTCGTGGACTCACTTAAGCTGGCTGTGGTCATGTGGCTGTTCACCTACGTAGGAGCTGTCTTCAATGGCATCACCATTCTCATCCTGGCTGACATCCTCCTCTTCGCTGTGCCTCCCGTCTACGAGAAGTACAAGACCCAGATTGATCAGTACATGGACCTGATTCGTACTCAAGTCAACACCACAATGGCCAAGTTGCAAGAGAAACTTCCCGGAGCTGTGAAGCGCAGCAAAACTGAATGATCAACCCCCCACCCTCCAAATTAGAAACCTCCATGTCACCATCATCctcatctccatctccatcttaGACCCCCTCACCTTCTGCTCCCCCTCTCCAGATAACCCCTGCCCCGAGTCTAACTCCTCCTCCCTACTCCATCAACCATCAGCCCCCCCTACTACACTGAACCTTGCTAGGTAGAAAATCTCTGAGCTACTCAATATTCAATGTAAAACTACTGCGCAGCTTAACTTGCAAGCATTAAAAAGAACTGTGCCTGTGCAGACAGGAAGCAGGTCGCTAGCGAGGAAGTGATGTAGCGGCGGGCCCTGACTGTCTGTGGGCGTGCCACAGGGGAATGGAGGCAGGGTCGAGTGAACTAGACTGAATCTATGACCTGGTTTTGTCATGTACAGCGAGCGGTGGGTGGATGATGGCTGTCTATGTCACAAAAAGCAAATGTCTGTACTTTAAACCACACATTTCCCTGATGGTAAATGGATCATTTAAGCTGGaaaagttaagaaaaaaaaagaaaaaaaaaatagaataaaagtAACCTTTTGGGTGTTATTGTGGCTAGTCTTATCCTGCTCTCGTGCTCTACAGTTGTTATGTGGATAGATATGAGTTGATTTTAGAGGCTAGTAATGGGTTTGCTGTTACTGATTGGCCTGTTATTGAGTTAGTTTCCATTCACCTTACAGGCACTTCTGTATCTAAGTTTCTGCAATGCActgaacttttattttattaaacccATGAGCAGGTTGAAATAAAAGGATTGGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190237 lncRNA upstream 79078 4366561 ~ 4368337 (+) True G141052
TU190239 lncRNA upstream 87957 4358921 ~ 4359458 (+) True G141054
TU190223 lncRNA upstream 105109 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA upstream 107452 4338533 ~ 4339963 (+) False G141045
TU190222 lncRNA upstream 115428 4330856 ~ 4331987 (+) True G141044
TU190277 lncRNA downstream 8453 4487740 ~ 4487994 (+) True G141079
TU190278 lncRNA downstream 8994 4488281 ~ 4488527 (+) True G141080
TU190280 lncRNA downstream 10706 4489993 ~ 4490601 (+) True G141082
TU190283 lncRNA downstream 13390 4492677 ~ 4493034 (+) True G141084
TU190295 lncRNA downstream 162418 4641705 ~ 4664198 (+) True G141093
XM_039823283.1 mRNA upstream 131870 4313151 ~ 4315545 (+) False zgc:112271
XM_039823284.1 mRNA upstream 131870 4313346 ~ 4315545 (+) True zgc:112271
XM_039821980.1 mRNA upstream 147825 4286328 ~ 4299590 (+) True LOC120572661
XM_039821979.1 mRNA upstream 164744 4271925 ~ 4282671 (+) False si:ch211-212k18.7
XM_039822099.1 mRNA downstream 18161 4497448 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822101.1 mRNA downstream 20421 4499708 ~ 4511964 (+) True si:dkey-28a3.2
XM_039822100.1 mRNA downstream 20422 4499709 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822098.1 mRNA downstream 20422 4499709 ~ 4511964 (+) False si:dkey-28a3.2
XM_039823545.1 mRNA downstream 49411 4528698 ~ 4594420 (+) True eml3
TU190255 other upstream 2468 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 131877 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 131877 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 1142784 3256551 ~ 3304631 (+) False mllt3
TU189858 other upstream 1543844 2857755 ~ 2903571 (+) False ablim2
TU190258 other downstream 4405 4483692 ~ 4487607 (+) True G141063
unassigned_transcript_682 other downstream 1549353 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1757716 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 2109664 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 3237327 7716614 ~ 7717329 (+) False LOC120573538

Expression Profile