RNA id: XR_005641408.1


Basic Information

Item Value
RNA id XR_005641408.1
length 4868
RNA type transcript
GC content 0.48
exon number 23
gene id acap1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 16019657 ~ 16043319 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagagaagagagactcCAGTCGGCTCTCTTGGGAAGTAACATCCAATCTACCGGCTACTACCACCTGATTAAATCATATTCTTTTGGACTATCGATCCGTATTGCTCAGTAAAGGATACTACTTTATTAACGAACAGATTTTTTTTGCAGCATCCTCTCCTCCGGCACGAGGACTAACTGGCCTTTTATGTGCCAGATTAAAATGGTAACGATAACGCAGCTAACGTCTCTCTGCGCTCATTCATAACTTGTGACAAGTCGTCTTGTGGCTCGGATGTGCGACACAGAGGAGGGCAGGTCAGGCACGCGGACGCGGTGTCCCTtcaagagagagaaaagctgAACAGGCTCGAGCTGCGGGAGGAATACAAATTCTACTtgtgaaagaaggaaaaaaaaaaaaaaacgtccgaCAAGAAGAATGAGACAAGCTGCCGGCGTCGAGCCTTAAAAGCCGAAGAAGATTTTAGTGTTCTTTGTCGGAAGAGGATTCCGAGAACccccgtgtttgtgtgtgacccgCGACTAGAAACGGAGGGATGACAGTCAAGCTGGACTTTGAGGAGTGTTTAAAAGACTCCCCGCGCTTCAGagCTGAAATCGAAGTGGTACAAAACGATGTGTGTGAACTCGAGACCCGATTAGAAAAGCTCGTGAAACAATGCCAGGCCATGCTGGAGGCAGGCCGAGTCTACTGCCAGACCAGCAAGAGCTTCGTCAACGGCCTCCGGGATCTGGGACAGCACTGCTCCGGGGACAAGACGATGGAGGAGTGTTTGGACAAATTTTCCAAAAAGCTGTCTATCGTCTTGGAGGCACAGGTgGATGTGATTGAAACCACACAGAAGTCAGTCAAGACGAAGCTGCAGAACTTTGTCAAAGAGGATGTGCGTCGGTTCAAGGACGTGCGCAGGGGGTTTGAGCGTGGCAGTGAGTGCCTGGAGGGGGCGCTGGTGAGGAACGCTCAGGCCCCACGGGGGAAACAACACGAAGTGGAGGAGGCAAGCAATGCTCTTCTAAACGCACGTAAGACCTTTCGGTCTGAGGCCCTGGATTACGTCCTGGAGATTAATGTCATTGAGGCCAAGAAGAAGACAGACATTCTGATGGCAATGTTGTCACTGATGGAGGCCCAGGCTCAGCTCTTCCAACATGGCCACCAGTCTTTCTCAGAACTGGAGGAATATCGACAGAAACTGAATGAAGAGcaCACTCAGTTTGTCCTAAACTCTGCCCGGGAGAAGAGGGACATGGAGCAAAGACATGCTGCAATTAagaaaaagGACGTGTCCTATGATGACTCCATCATGGATTTCAACGCTGATGCAGCCAACGGAATCGCCATGGAGGGATACCTTTATAAGAGAGCCAGCAACGCTTTCAAGACCTGGAGCAGGCGTTGGTTCTCGATTCAAAAAAATCAGCTGGTGTATCAGAAGAAATTTAAGGACCAGCCCACGGTCGTGGTGGAGGACTTGCGTCTTTGCACAGTCAAGCCCAGCAGTGAAAACGAGAGACGATTCTGCTTTGAAGTGGTCTCCCCGTCAAAGTGTTGTTTGTTACAGGCAGACTCGGAAAGGCAGCAGAAGGCGTGGATAAGTGCCGTCCAAAACAGCATCGCCTCAGCCTTTCAGGAGCACAGAGAGGACCCACACAGCCcaagacaGCGCCTCAGCTCGGTGTCGGCGAGCAGtttgggaggagggggaggagtggATCAGGAGAACAAGGGCTGCAAGGCGCTGGAGGAGGTCCAGGCAATCCCAGGGAACAAGCAGTGCTGCGACTGCGGGGAGCCCGGTCCTGATTGGGCCTCCATCAACCTGGGCATCACGCTTTGCATCACATGCTCAGGAATACACAgGAGCCTGGGAGTCCATTTCTCCAAAGTACGCTCGCTCACTCTCGACTCCTGGGAGCCAGAGCTCATTAAGTTGATGTGTGAATTAGGAAACACAGTAATCAACAGGATCTACGAGGCCCGGATTGATGAGATCACCATCAAAAAGCCCCACCCCTCCAGTCCCAGAGGAGACAAGGAGTCGTGGATCCGATCAAAGTACGTTGAAAAGAAGTTCATCCAAAAGCTGCCCGGCACCGGCAACACCCTGCTGAGGCGATCCAGCGCCAAAAGGAACCGAGCGGCCACGCAGGACCGGACCGTACAGCGGCCGCCGCTCAAACCCAAACCGAACCGAGCCACTCTGCCTCGGGTCACAGGGCTGAGCCCCAGTGACCTCGTCCAAAAGAACAATACACACAAAGACGTggaagaggatgaagaggatCTGAGCGGCCTTCACCCCGGCGCGCTGCTGTACCGCTCAGCGGCCCTGCAGAACTTCCCTGTCATGGCCGACGCTTTGGCCCACGGGGCCGACGTCAACTGGGTCAACGTTGCCGAGGAGTCCAGCACGCCGCTGATACAGGCCGTCTCAGCGAATGCCCTGGCAGCCTGTGAGTTCCTGCTGCAGAACGGCGCTAACGTCAACCAGGCAGACAGCAACGGGAGAGGGCCGCTTCACCACGCCACCATCCTGGGTCACACCGGGTTGGTTTGTCTCTTCTTGAAGCGAGGCGCAGACTACAACGCCAGAGACAACAACCAGAAAGACCCCATAACTATTGCCGTGGACAATGCCAACGCTGACATCGTCACTTTGCTGCGGATCGCCAAAATGAACAAGGAGATGCGGGAGATGGACGGAGCGTTTGGCCAATCAGGTCAATCGGGGGGGCAGGGATCTGGAGGTTTATTGAGTGGGATAGGAGGTGGGCGGGCCCACGGCAGGAAGAGCCTCCAGTCTATAAAGAACCACATAAGTGGCTGGGCTCTGGGGGGGCAAAATGATTAGTGGGGATAGAAATCAGCCCAGGACAAGAGACAGGCAGTGAGACTGGAATGAGCGTGTTTTTGGTTAAGTATCAAGTTGTTAAGTATCAGAAATCACTGGTTTTGCAATATCATGTGGTGTTTATCTGCAGTATCTGCAGAGAAAGTGTCCTGAAATTGCCATAATTAAGAAAGCATAAAATCCAATTCTTGTAAACCAAGAACGAGCCAGAACACAGGGTACGACAGAGGCTCAAGGACATAAGTGAGACAGAACACATTTATTATATCGGTGAAGACAGGAAAATGCCTTTGTGGGAAAGTAACAGGAGTCCACATTGCACTTTGAATTACAAACGCACATCCTCCTGCACTTTGAAGCCCACAAAATCTCTGAATACCGTGTCAATAGAGAGTGCTGCGTGTGAGTGTTTCCAATATTGTACATCTGAGGTTTAAGAAAATGTATATACACTAGACCTAAATCAGGCCTATTCTTTCTGATATTGTATATTGGGGATATTTTATATACAGGATGTACAATGTTCTGGCTTTataagagatttttttttttttattgtgcatcTCCATGTGTACTGGACTTTTTTAGTCTAGTTATGTAAGCTAAATTCAATGCCGGGTTTGGTTCTCAAGGACAGTTTTATCCTGCTATTCTGTGAATAGTTTGAAatctgttatatatattttgtatttatcaGAATTCCATGAGCTCTGTGCTGCAGCTCTTGAGCTTAACAAGGGTTTCGTTTGCATTTTGTCATTTGGCTCCTTTTCAAGCTGCAAAGTCCATTCTTTCATGACTGTCCTTTAGTGGCTATCAAAGCTTTTTGTTAAGTTTCTTGTGTCAGCCGTATTCCATCACGGTTTCCCTCATAAAGGAATGGAAACGTGATGCTTTTGTCTGCTCGAAACGACTGCTGGTCAGTATTTGACGTGCTGTGCTttatcactgtgtgtgtctttgttgtgtgCACTCATGTGCCTTTGCCTTCTGCCCGCTGAGATGTCCAGCTGGTCTCAACTGCTTGTGCAGTGTGCCACCTACTGCACACTAAGAGGTGATGAAACCTACCAGGACATCTTCAGAGACTTTTCACACATGGCCTCAAACAACCCTGAGAAGCTCAAACGCCGCAGTGCAGACCCCAAATCTTAACCAGCTGTTGCCTCCTCTTCACACAGCTGTACAATGTCACATTTCACACTTGCATACTTTCAAACGCATATATAGAACGTGCTAGTATCCAACTCACAGACGTGCAGACACATTTTCCTTGGCTACCTGCCACATGTTCATAGCTCAGCTGGTGTTGACTTCAGAGGGGATGAACGCTCCGAACAGTGAATTCATTGTGCGAACACGTCAGACCAGAACAATTGTGCCAAGTGAGAACACTGGAGCAGCTTTTTGAGACCAGCAGGAGGTGTCTTTATGCGTAGCGGAGGGTAACGCCATCATTCTGCCAAGATTTCTTAATTAAATCTGGTAAAtcccgttttttttatttttgttttttttaactaaaaggGCAGTGTTTTTATGTTCCTCTGTTATTTCTATTGAATTGTTGGTTACACTTGaatgtatctacataagagtgacatgacactgtcatgaacgtgtcataaacattataaacaagtcataaacgtttctGACATAActcttcttttagtaagtgtcactcggtttttgtcatgacaagttagggttagggttcatgtgtcttCACTGTCATGATCGTCTCATGTCACTCtgatgtcactcttatgtagataccttcaagtagaGTGTTACCGAATTGTTACATGAAAAAGTCAGTGTTTGTTGGAAATGGACATAATCATTGCAAAGAGGAAAACCTTATGTCAAATGTCTTCCATCGAATTGTATAGATTTTTAAATGTGGGACATTTTTAGACACTGTTCACATGTCTATTTTGTTAAAACTGTGCAAGGTACTTAAGATTTGTTTTATGATCAAATAAACTGTGATACAAAACACG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193828 lncRNA downstream 50673 15966592 ~ 15968984 (-) True LOC120572216
TU193829 lncRNA downstream 50673 15966592 ~ 15968984 (-) False LOC120572216
TU193830 lncRNA downstream 50673 15966592 ~ 15968984 (-) False LOC120572216
XR_005641391.1 lncRNA downstream 50694 15966714 ~ 15968963 (-) False LOC120572216
XR_005641389.1 lncRNA downstream 50694 15966714 ~ 15968963 (-) False LOC120572216
TU193869 lncRNA upstream 61366 16104685 ~ 16109461 (-) True G143649
TU193941 lncRNA upstream 161863 16205182 ~ 16207186 (-) True G143708
TU194040 lncRNA upstream 354674 16397993 ~ 16398984 (-) False LOC120572710
TU194042 lncRNA upstream 355194 16398513 ~ 16400115 (-) False LOC120572710
TU194069 lncRNA upstream 623089 16666408 ~ 16666722 (-) True G143808
XM_039821471.1 mRNA downstream 26019 15984222 ~ 15993638 (-) False trip6
XM_039821469.1 mRNA downstream 26019 15984222 ~ 15993638 (-) False trip6
XM_039821470.1 mRNA downstream 26128 15984222 ~ 15993529 (-) True trip6
XM_039821418.1 mRNA downstream 40701 15969094 ~ 15978956 (-) False LOC120572217
XM_039821419.1 mRNA downstream 40823 15969094 ~ 15978834 (-) False LOC120572217
XM_039822524.1 mRNA upstream 72937 16116256 ~ 16119373 (-) False LOC120573086
XM_039822521.1 mRNA upstream 72937 16116256 ~ 16119373 (-) False LOC120573086
XM_039822525.1 mRNA upstream 72937 16116256 ~ 16119372 (-) False LOC120573086
XM_039822526.1 mRNA upstream 72937 16116256 ~ 16119256 (-) False LOC120573086
XM_039822522.1 mRNA upstream 72937 16116256 ~ 16119256 (-) False LOC120573086
unassigned_transcript_699 other downstream 665322 15354247 ~ 15354335 (-) True trnar-ucu_16
XR_005641483.1 other downstream 897703 15089110 ~ 15121954 (-) False LOC120572742
XR_005641484.1 other downstream 897703 15089110 ~ 15121954 (-) False LOC120572742
XR_005641489.1 other downstream 897706 15088999 ~ 15121951 (-) False LOC120572742
XR_005641488.1 other downstream 897706 15088999 ~ 15121951 (-) False LOC120572742
TU194121 other upstream 1204632 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other upstream 1204769 17248088 ~ 17249554 (-) False LOC120572513
TU194183 other upstream 1701635 17744954 ~ 17752989 (-) False tbc1d19
XR_005641649.1 other upstream 1723181 17766500 ~ 17821077 (-) False rbpjb
TU194343 other upstream 2016873 18060192 ~ 18061155 (-) False LOC120573700

Expression Profile