RNA id: XM_039821469.1


Basic Information

Item Value
RNA id XM_039821469.1
length 3888
RNA type mRNA
GC content 0.47
exon number 11
gene id trip6
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 15984222 ~ 15993638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacagacacacacacagcagttacGTCACACGTCGGGAATGCAGTGAGGAGCTGCTGCTTCTGCTAAAGGCCTCTGGATCCGTCACAAAATGAGACTGAAGGGAAGAGGAGAGTCACTGTAAAAGAACCCTGCCATGTCCGGTCCCACCTGGCTTCCTCCGAGGACTCTGGATAGCCCAGAGCGAGCTGTGCCCcagatgtctcactctgccGGGTCAGCAATGTACCGAGCCCCCAACAAAAAAGGGACATCCGACTTCCGGCCAAAATATGGCCCCTATGACCAGAACGGAGCAgcggcaggaggaggaggaggagcaggaggaggaggaggagggatggcCACCAGGTACATGGCAACTGGACCCACAGGTGGGCCCATTCATCATTCGTCGAGCGATCACTATTACCCCCCTCCCCATGGTCCCAAAGAAGACCGTATCTGGAGCCCTCACATGGACAGCTATGAGCTGATGCACCGTGGTCCTGAAAAGCAAGCGAGTTATCACTCTAAAATTGATGCTGATATCGACTCCCTCACCAGTATGCTCGCAGATCTGGACAGCCACCCACAGGACTCCAGCACACAACTGTACGACAATGTGCCTTACAACAAGTACCTCTCAGGGGATCACTACAAGCCTGCACACCAGAGCGCAGCCCCTCCTCAGGGTCGACCATCCAGGGGCTACCCCCCTCATCCCCAGAGCCAATACCACCCAGCGCCCCCCTACCCCAGCGAGCACCAGTCACCTCAGTACTCCACCTCCCACCAGCAGGACTACTACTCCCCCTCTTCAACCCCTAAGCCCTTCTCTCAGCCCTACCCTCAGCCCGTCCCGGCCTCCTACACCACTGCCTCAACTCCTACTGGGCCCAGGTTCAGCGTCCAGGTCAAGACGGCGCAGCCTGTCACCTACTctcagacaggcaggcaggctgaACAGGCCTACACACCACCCCCTCCTCGCCAGCATGTGTCACGCCCCCCTCCCCAGACTCAGACAAGTCCGCAGGGCTGGTACCCTTCACATCCCAGCTCACAAGCTCAGGAGATGCACTCTGAGGCGGTGTACAAGGGGAGCGGCTCAGGACCTGGAGGAAGAGTTAACCAGGTTCCACTGTCCAAGAGAGGGATGGAAAATAATCAAACAGGGTCAGGGGCAGCACAGAgtcctgcttatcagtccagcAAGCAGGGAATAGCAACAACTAGGCCTGAGGAAGAGTTGGATCGACTCACCAAGAAGTTGGTATATGATATGAACCACCCCCCCGTGGAGGACTATTTTGGCCGCTGTGCCCGCTGTGGTGACAACGTGGTCGGCGACGGCAGTGGCTGCATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACATGCATCACCTGCCACGCCCGTCTCCGAGGGCAACCCTTCTACGCCCTCGACAAGAAGAGTTACTGCGAGAGTTGTTACATTAGTACATTGGAGCGCTGTTCAAAGTGCTCCAAGCCCATCCTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCATCCTCGCTGTTTCACATGTGTGGTCTGTAACTGCTGCTTGGACGGGGTGCCCTTCACCGTGGATGCAACCTCTCAGATACACTGCATTGATGACTTCCATAGGAAGTACGCTCCTCGCTGTTCAGTTTGCGGTGAGCCCATAATGCCCGAACAGGGCCAGGAGGAGACGGTGAGGATAGTCGCTCTGGACCGCAGCTTCCATGTTAACTGTTACGTCTGTGAGGAATGTGGGCTCCTGCTGTCCTCTGAAGGGGAGGGCCGAGGCTGTTACCCGCTGGACGGCCACATCTTGTGTAAGAGCTGCAGCGCTTGCCGCATCCAGGACCTCTCAGCCAAAATCTCCACTGACTGCTAACAAAAGCCTTTTTGCGTGCGTCCGCTCCACCTTTCCAGCACTCTCACGAATCCACGCACAGTCAACGTATTACACATTACTGACGGCGCAGGCAGGAAATGCCCCTGCTTTGATCAGACTCGTGAGgtgcttttccttttttttggttGCGCTGACTATGACATAAACTTTGCTACAGTTCCCTCTGTTGGTATCCCGctgtaatttaatttgcagGAACATGTTTTGAGACGGAGTCCTGATGGAGCAACCACCTCGCTAGTTTCCTTTCAATCAGATGTCCTgctacattttctttcttcttttaattTGGTACACCGCTGCCCCATTTTTCACGTTTAGTTCAGTATTAGTATGACCGTGGCCTGACCTGCAGGCAGCTTGGGCTCCACTTACCATTTATCGGTACTGCTCAACTATTAGCTTGCACATTATTATCACTGTCTTAAGACAATGAAAGTATGGAAGCATAACATAAATTTGGACCTGAaaatgagtctttttttttttttttttcttcaaagaaGCAGCATTAATGataataaattacatttgtaaAACACTAAATGTCAAAGTGTAGAACTGCCTCAAAGCAAGCATATAAAAAGCACATAATGCAACAACTGTGACTGTACATAACAGGCTGGTTTGGTTTGATCAAACTGTTCCCTACTATtttggaagtagccatcagtgCAGTGGATCTTTGCAGAGAAGTAGCCTCATATAGCAGCAGAAATGTAGACAAAAGGAATGTGTAGTTAACCTTACAACCTAGacgtttattatttttattttattttgagctTTTATTAAATGCTAGTACAGTATTTGCTAGAACAAATCTGGTGTACATCTCCAACATAACAATATCATGTTTAGTTATTAAATCGACGCTCATAACAGGATTGTtgccattatgttttttttttattcatcgaGAATAACACTTTTGAATGTCTACAACACACAATCTTGCTTTGGTTTGAATAACATTCGTTGTTGGTTGATACTTGACTGTTACTGTACATTTGAAGATGACGGTGCAATGAAGTCAAATGCTTTCTTCTGTCTTAGGAAAACAGGGTGTTGGTTTGCTAGAAAACATCCTGAAATTTGAGATCATGTGAAGAGTTTGTACATGTCCTGTGTGTCAGTTGGAGGATGTATGAAACTAAACTTATACTCCATTTACAAGTATATCAAGTTCATTGatttacatacacaaatacTTTTACATACTGGTTAAAGTGGACTTTAATATGATTTTGGAATACAGCGCATTTGATGTTTGTTCATCCTTGCACTCATGTGGGCCGAGTCATGTGCACTCTCTGAGACTTTGGAGCTACAGTATTTGTTACGATTATGTCTAACCTCCGTCTTTCCGTCCGGATTTTGTATTTCTGTATCTTAAAGGGCTAGAAATTTGAAAGCCTTATCTCAAGGATGTCCTTCAGTTTCATAATGATCCTTTTTTTTGAAACTGGATTTGTCTGTGAAatcttgttattttttgttttgttttgatcaTGCTAAAACGGTTCAGTTGCATTTGTTCATCTCTTGTTAATTTATCTCACGATGTATATACCATATTAATCTGCTTATTATCGCCACGGTTATCATTTCATTCACGCTCAGatgtgtcatttttaaaatcCTGACCCTTCAACTCTTGTGTCATACTCCTTGAATCCCgtcatttagtttttattacaCGGTCATCTGTTGATTATGCTTACCATGTGTTCAGTTTGAAATGGTGTGAATTGGAGCCTGTAGATGAAAGCCGGTGGTACTGCAGCAGACGTACTGCAGCGTCCACTGATGAATTCAGGCattttgtacagaataagcaGGTTGTTGAAGTAGAAAATGGTAGTTAGTTACACTACATGGGAGAACATGTGAACACATGGGTggattttctcttaatacagGTTGTAGCAACACAATTGATTATTAAAATGACAAGTAAATCGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193828 lncRNA downstream 15238 15966592 ~ 15968984 (-) True LOC120572216
TU193829 lncRNA downstream 15238 15966592 ~ 15968984 (-) False LOC120572216
TU193830 lncRNA downstream 15238 15966592 ~ 15968984 (-) False LOC120572216
XR_005641391.1 lncRNA downstream 15259 15966714 ~ 15968963 (-) False LOC120572216
XR_005641389.1 lncRNA downstream 15259 15966714 ~ 15968963 (-) False LOC120572216
TU193869 lncRNA upstream 111047 16104685 ~ 16109461 (-) True G143649
TU193941 lncRNA upstream 211544 16205182 ~ 16207186 (-) True G143708
TU194040 lncRNA upstream 404355 16397993 ~ 16398984 (-) False LOC120572710
TU194042 lncRNA upstream 404875 16398513 ~ 16400115 (-) False LOC120572710
TU194069 lncRNA upstream 672770 16666408 ~ 16666722 (-) True G143808
XM_039821418.1 mRNA downstream 5266 15969094 ~ 15978956 (-) False LOC120572217
XM_039821419.1 mRNA downstream 5388 15969094 ~ 15978834 (-) False LOC120572217
XM_039821417.1 mRNA downstream 5388 15969094 ~ 15978834 (-) False LOC120572217
XM_039821420.1 mRNA downstream 5388 15969094 ~ 15978834 (-) False LOC120572217
XM_039821416.1 mRNA downstream 5388 15969094 ~ 15978834 (-) True LOC120572217
XM_039821467.1 mRNA upstream 26019 16019657 ~ 16043318 (-) False acap1
XM_039822524.1 mRNA upstream 122618 16116256 ~ 16119373 (-) False LOC120573086
XM_039822521.1 mRNA upstream 122618 16116256 ~ 16119373 (-) False LOC120573086
XM_039822525.1 mRNA upstream 122618 16116256 ~ 16119372 (-) False LOC120573086
XM_039822526.1 mRNA upstream 122618 16116256 ~ 16119256 (-) False LOC120573086
unassigned_transcript_699 other downstream 629887 15354247 ~ 15354335 (-) True trnar-ucu_16
XR_005641484.1 other downstream 862268 15089110 ~ 15121954 (-) False LOC120572742
XR_005641408.1 other upstream 26019 16019657 ~ 16043319 (-) True acap1
TU194121 other upstream 1254313 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other upstream 1254450 17248088 ~ 17249554 (-) False LOC120572513
TU194183 other upstream 1751316 17744954 ~ 17752989 (-) False tbc1d19
XR_005641649.1 other upstream 1772862 17766500 ~ 17821077 (-) False rbpjb

Expression Profile