RNA id: XM_039821565.1


Basic Information

Item Value
RNA id XM_039821565.1
length 1500
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120572304
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18665191 ~ 18701577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaaaaagaaaaaaacctatGCACGTCGATAGAGCATCTCTGAACAAGATGTGTCGCACGTTTTTAGTTTTGTTAAACTTTTGAAACGTTGTTTGGATTATTCACGAAGGTTAAATGTATACATCGGGTAACTTTTCGGCTCGTAATAGCCATTTTTACAACGCTTTATTTTAGTTAATTTGATGCGCAACTGGAGGCCTAGCACCGATCACCAACGCCCATCAGGCCAACGTTCGAGATTtaagctaactaacgttagctgacgtcAAGCTCTAGCTACTTCACGgtACCAGTGCAAACATACTGAATTTCCAGCTGTACCTCCTGGAAGGCCTGGACAGGTGGAACCAGGATTCAGGGACTGCGGCGGTGACCAGCAGGCCGTCATCCCTCCTCACCTACGCCGGGACTCTGTCAACACCAACAGCCTGAAGGTGTTTGGCCGGACATTTGTTCCAACCTGCCAAATACACTGATATGATGCCTCTTTTGCACAACTATGTTACCGTGGATACAGACATGCTCCTGTCCAACCCTAAACACTTAGAGGTCATCTACAGCATGTGCAAAAAGGTGCTGACCATCGATGCAGGTGAGGACGCACAGTTTCACGCTGCCAAACTGTTGGAGGTCATCATCCTGCAGTGCAGAGGCAGAGGCATTGACCAGTGCATCCCTCTTTTTGTGGAAGCAGTTTTGGAGCGTTTGATGCGGGGGGTGAAGTCCAGTGAGCTGAGGACCATGTGCCTGCAGGTGGCCATCGCTGCTCTTTACTACAACCCAGCCCTACTCACTCACTCTGGAAAACATGCACTTCCAGCTCAACCCTCAGCCCATCACCACCCACTTCATCAACCAGTGGATGAATGACACAGAGTTCTTCCTGGGGCTCCATGACCGTAAGATGTGCATCATCGGCCTGAGCGTGCTGATAGAGCTGCCCAGTCGGCCGGCAGTGCTGGAGGGAGTCGCCGCCCAGATTGTCCCCTCCATCCTGCTCCTGTTCCTGGGCCTCAAACACCTCTACGCATCCCGCCTTGTCAACAAACCAGACCTGCTGGCCCATGCATGGGCACAGGAAGAAGACCAGAATGGTGAGAAAAGATGGGCATGGACAGAACAAGGACGACGTtaggaaagtaaaaaaaaaacggagtTGGGAAGATGGAGTGCAGGACAGAGGCAAAGGGACTAATGTAGAATGaatacagacagaaagaaattcgagagaagaaaagaaataggCTTAGTGATGATAGTGAAATGAGATTCTCAATTTTTGCCAACATCAGATCTCCCACTACTTGAATCTTCATTCAGCTCTGAGCTGAGCTCAAATGAACTGCACCACATTTACTTTCTCTTCCCCACAGGCTCTTACTTTGCTTCAGTCAAGCGTAAAGGAATTTGATTCCCAAACCTTGTCTACTGCTTGTGGGGCAGACTGATGAATTAAAGGAGAATTcaggccaatttttacgttagtCTTGATCGCAata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194639 lncRNA downstream 125610 18536147 ~ 18539581 (-) False c14h4orf48
XR_005641738.1 lncRNA downstream 415134 18248443 ~ 18250057 (-) True LOC120573605
TU194570 lncRNA downstream 492170 18169293 ~ 18173021 (-) False mrpl52
TU194367 lncRNA downstream 645885 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 662720 17992145 ~ 18002471 (-) True LOC120572704
TU194729 lncRNA upstream 126887 18828464 ~ 18830315 (-) True G144303
TU194784 lncRNA upstream 234398 18935975 ~ 18936227 (-) True G144346
TU194852 lncRNA upstream 261289 18962866 ~ 19056782 (-) False clcn3
XR_005641466.1 lncRNA upstream 291892 18993469 ~ 19001392 (-) False LOC120572676
TU194868 lncRNA upstream 293174 18994751 ~ 19002231 (-) True LOC120572676
XM_039823402.1 mRNA downstream 27199 18632078 ~ 18637992 (-) True rgp1
XM_039823403.1 mRNA downstream 27572 18632078 ~ 18637619 (-) False rgp1
XM_039823285.1 mRNA downstream 39119 18612673 ~ 18626072 (-) True pik3c3
XM_039823286.1 mRNA downstream 39120 18612673 ~ 18626071 (-) False pik3c3
XM_039821643.1 mRNA downstream 104138 18551540 ~ 18561053 (-) True faah2b
XM_039823086.1 mRNA upstream 140499 18842076 ~ 18845520 (-) True ankrd53
XM_039821855.1 mRNA upstream 176544 18878121 ~ 18886053 (-) True si:dkey-185m8.2
XM_039822852.1 mRNA upstream 201389 18902966 ~ 18912675 (-) True LOC120573249
XM_039823440.1 mRNA upstream 236541 18938118 ~ 18945452 (-) True trmt10b
XM_039822020.1 mRNA upstream 283055 18984632 ~ 18991780 (-) True ino80b
TU194667 other downstream 67960 18595102 ~ 18597231 (-) True G144258
TU194399 other downstream 541501 18113852 ~ 18123690 (-) True G144058
TU194343 other downstream 604036 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 844114 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 912202 17744954 ~ 17752989 (-) False tbc1d19
unassigned_transcript_708 other upstream 35505 18737082 ~ 18737152 (-) True trnag-gcc_1
unassigned_transcript_709 other upstream 263789 18965366 ~ 18965437 (-) True trnad-guc_5
unassigned_transcript_710 other upstream 265365 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_711 other upstream 269815 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_712 other upstream 363583 19065160 ~ 19065241 (-) True trnas-gcu_6

Expression Profile