RNA id: XM_039821583.1


Basic Information

Item Value
RNA id XM_039821583.1
length 2380
RNA type mRNA
GC content 0.45
exon number 3
gene id rbm4.1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4369182 ~ 4373673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCACCATGGATGTAGCGCTTGGCGCTGTAATATAAATCCCACCCAAAAGATGCTAACCGGGTAGCTTAGATGTATGTCTTTGCCATGGTTGTCACGAGCTGGTAGTGCCAGTCGGTAGACGGTGGTCATCTCATTCTCCGAGGGACTAGACGCACATTGCAGCTTTAAAAAGTAACGTGGAAGCTCCACAATGGTGAAAATATTCATCGGGAACTTGTCACCAGACACTACATCGGACGAACTTCGCTCTCTCTTCTCCCAATATGGCAAGATTGGAGAATGCAGTATTGTCAAGAACTTTGGCTTTGTGCACATGGATGACAAAGCGGAGGCGGAAGAAGCCATCAGAAACCTCCACCATTATGAGCTAAACGGCCAGCCTATGAATGTAGAATTGAGCCGTGGCAAGTCAAAAGGATCCACTAAACTACATGTTGGCAACATTGCCTGTACTAACCAGGAGCTGAGGGCCAAGTTTGAAGAGTTTGGCTCTGTGTTGGAGTGTGACATAGTAAAAAACTATGCTTTTGTTCACATGGATCGAATAGAGGATGCCATGGAGGCCATTAATCAGTTAGACAACACAGCTTTTAAAGgcAAACTGATGAGCGTGAAGCTTTCGACTAGCCGCCTGCGTACTGCGCCGGGAATGGGAGACAGATCGGGTTGTTATCGTTGCGGGCAGGAAGGCCACTGGTCCAAAGAATGCCCTCTAGACCAAAATGGCTACCACAGAAACGGCTCAGAGCCAAAGTCTGATGGATACGATGCCTCGAGATTTGACGGGCGTGCTTGCAACAGGGGTTATCATCCGGACTTCAGTGGCGATCCAGATTACGGTGGCTATGCTCCTGTACATGGTTTTTCCCGTGGTTCTGGTCACAGCAGCGGCATGGCAGGGTACAGAAGGGGTTCAGGCTACGAGAGCGCAATGAGATACGGGCCGGTTCCAGGTCAAGGCATTAGCACTGATGCTGAACATAGCATGGCTCGGATGTATGGCAGTGAGGCGGCATACATGAGCAACGGCTCACTCTATGGCGCGGTACCAGCCTACCCGATGCGACGGTCGTCTTACGAGGAAAGGGATCCGTACGGTGTCGTGGACTACTACGGGAAGTACAGGGCCAATTCTTACGGAGGCAGTTATTTTGAGGAACGTCGCGCTGTCCACTTGCCGGCTCCATCAACATCCTCCACAGCTTTAATGAGGGAACGTCTGCCCCCCTCTAGCCACGACCCATACGAGTgccctccccttcctcctccaccaGCCCCAGTCTCCTCATACTACGCACGTGACCGGAGTCCGATTCGGAGAGTCCCCGTCGAGGCAGATGGATACTCATATGAGCGTTCGCGCATTTCCCCTGTGCCCGCCCCCCCAAGAGGTTCTACCTATGACCATCCGCGGGATCCCGCCGCTGATCGGGCAAGATATGCATACTAATCCTTGTAACATACAGCCAGGTTAGAGTTCTCTGACATTCAGTGGATAAGATAGCCTACGTGCCAGAGGAATCACTGAAAACGAAACAATCATATCTTATTGGTAATATCGAAAGCAAAAGTCAGCCCTCAGTGTGTTTGGGTAGTAAGAATAAGGTTACAATAAAGCTTACCAACCACAATAGCCAATAAGTAGATTTCAATATGAATAGTTGAATACCCTCACATACTATGATCTCATTCCAGGTACTTCAAAATGCAGTACAATTAATGATCAGTCGACCACTTTCATTGTCCTATTTACGTGTTGTGGTATTAGTGCAGTTCTGAGATGGCTTAGCCTAGGTGCCGATACTGGGTCTATCTACAACGTGGTTGATGTCTATTCACGAAACAATAAGACCTGAATTATTGCTCCTCTGAAAGTAGCTATATGTTATATACACTATTTAGACTCAGTTAATAGAAACAAATTAAATTGGTGCATGTTTTGTTAAAGGGGAGTTTTAGTCACATGAATTGattttaatcctttttttttttttagcagcatCTCAAACTATGTGCATTttagtgtatttgtgtttgtataaATTCAAATTGTTACTTTACTGCATATGTGAGGCAATgacaaaacacatttgaataCTGTATACTTCATCACCTACATTGTTTAACCTGTGGGATGTCCCACCTGTACCAAATATGGACCTGCAGTTAAGTTGAACGTTTTATCAAGCTGCATcgtaatcatgttttttttgtccgtATAGGCACATTGATTTTCATTGCTGTGATAAAGATAAGGCCTCATATCTTGAACATATGTTTGAGTTTCATAATGAAAATCACCTTAATTGCCTATGCTGTCTGTCTTGATTTCTATCAATGAGGTTCAAATTAAAATCTGTTTGTCTAAAGTCTTAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13187 RBM4; RNA-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190303 lncRNA downstream 37163 4331154 ~ 4332019 (-) False LOC120573533
TU190220 lncRNA downstream 49540 4318901 ~ 4319642 (-) True G141042
TU190219 lncRNA downstream 53638 4314178 ~ 4315544 (-) True G141041
TU190195 lncRNA downstream 93908 4274651 ~ 4275274 (-) False G141027
TU190317 lncRNA upstream 104757 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA upstream 104757 4478430 ~ 4482046 (-) False G141109
TU190329 lncRNA upstream 110065 4483738 ~ 4484782 (-) True G141114
TU190330 lncRNA upstream 112230 4485903 ~ 4486466 (-) True G141115
TU190332 lncRNA upstream 115627 4489300 ~ 4489504 (-) True G141117
XM_039821578.1 mRNA downstream 830 4353601 ~ 4368352 (-) True sf1
XM_039821577.1 mRNA downstream 974 4353601 ~ 4368208 (-) False sf1
XM_039821581.1 mRNA downstream 974 4354588 ~ 4368208 (-) False sf1
XM_039821579.1 mRNA downstream 974 4354588 ~ 4368208 (-) False sf1
XM_039821582.1 mRNA downstream 1950 4353601 ~ 4367232 (-) False sf1
XM_039821584.1 mRNA upstream 517 4374190 ~ 4379514 (-) True LOC120572314
XM_039821585.1 mRNA upstream 517 4374190 ~ 4379492 (-) False LOC120572314
XM_039823073.1 mRNA upstream 8110 4381783 ~ 4433883 (-) False map4k2
XM_039823069.1 mRNA upstream 8110 4381783 ~ 4433883 (-) False map4k2
XM_039823071.1 mRNA upstream 8110 4381783 ~ 4433883 (-) False map4k2
TU190189 other downstream 93908 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 93908 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 93908 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 93908 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 213635 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 267822 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 286948 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 585006 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 726032 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1223285 5596958 ~ 5600462 (-) True G141400

Expression Profile