RNA id: XM_039821603.1


Basic Information

Item Value
RNA id XM_039821603.1
length 1417
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC120572330
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7990198 ~ 7997708 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCACTTTCATACTTGAGCGCTTTTATCCCCCCCACCAGACGGACGGTATCCATGAAACGTATCTGAGGAGTTTCGACTTCGTTGTGGCGCCGTTCGCAAGCTAATACACTGGAGCAACAATGGTCAAGATCTTCATTGGGAACCTGTCTCAGCACACTGAGAAGGAGGACATTGAAGCTCTGTTCACCCAATATGGCACAGTGACCGAATGTGCCAAGTACAAAAACTATGCTTTTGTCCATATGGAAGACCGCAAGTCCGCCACCAAGGCCATCCGTGAGCTCCATCTCCATAAGCTGAACGGCAGACCCATCAATGTGGAGCCCAGCAGAGGGAAAGACCAGTATCCTGTGAAGCTCCACATCGCCAACGTCGAAAAGGGCTTCGACGACGAGCTCCGTGCCCTGTTTGAGGAGTATGGCACAGTCCGAGAGTGCGCCATTGTCAAGAACTTCGCCTTTGTACACATGGACAGTTCTGATGAGGCCATGGATGCCATAAAGGGCCTGGATAACACAGAGTTTCAAGgaaAGCGCATACACGTTCAGATATCAAAAAGCAGacccagaggagaggaggaggagttccCACATCCTCCGCCGGGCAGAGGAGGCTATTATCCTCCCCGCTTCCCAGGGGAGAGGCCCGAGCATCCCTACAGAGAGCGCATGCCCGCTTACGCTCCTCTGCCTCCACCGCCCCCTCCCCCGAGACGGGCATCGTATCCCGACCGTGGCTATGGCGAGCGCGACGCCTACGGGATGGTCGATTTCTATGAGAAATACAGAGCCCGTCCTTACAGCATGGCAGGCTACGACGGCAGGCGTTCCAGTGACCCCCCTCCTCCGCCTCCCCCCTCTGCACTGGTCAGAGAACGCCTCGGGATGGGTCCCCCTGACCCATACGACCGCCGTCcgctccctccccctcctcctccgtcCTACATGGCCAGGGATCGAAGCCCCATCAGACGAGCCCCGCCGCCACCCGCTCCGTCGGCTGGTAACGGGTACTCCTACGAGCGGTCCCGGCTGTCCCCGCTGTCCAGGGCTCCCATGTACGCTCCTCCGATGTACGGGGCGCCTCGCCCCAGGGACTCCTTCTCAGAGAGAGGGCCGCCGCCGCCACCACCACGATACGCGGGCTACTAGGCACACAAGAGTGGGATTCAAGGTTGTTAGTGTCAGTGCTGGAGATGCCAGCTCATGGTAAGTTCTCCTCAGAAGATGTGCAGCGCCCTGTAGAAGAGAGGTAGGCATTGTTTAAACTTTTACTGCACAACACTTAACTCATGCAACTAATGGTCTCATGTCTCCCTCTTGTGGTAATTAATTCACACTGCAGTGTGCCCATACATTAGGGagtctttaaaggggtgatagaataattgattgattgattatatagggtatttca

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191337 lncRNA upstream 52708 7840930 ~ 7937490 (+) True G141857
TU191356 lncRNA upstream 93985 7895851 ~ 7896213 (+) True G141871
TU191354 lncRNA upstream 104551 7884822 ~ 7885647 (+) True G141869
TU191350 lncRNA upstream 114258 7874406 ~ 7875940 (+) True G141866
TU191306 lncRNA upstream 207163 7750283 ~ 7783035 (+) True G141835
TU191464 lncRNA downstream 63778 8059206 ~ 8060478 (+) False LOC120572385
TU191466 lncRNA downstream 65631 8061059 ~ 8061293 (+) True G141942
TU191467 lncRNA downstream 65971 8061399 ~ 8061861 (+) True G141943
TU191472 lncRNA downstream 74358 8069786 ~ 8073974 (+) True LOC120572412
XR_005641445.1 lncRNA downstream 74754 8070182 ~ 8073990 (+) False LOC120572412
XM_039821600.1 mRNA upstream 4983 7970017 ~ 7985215 (+) True fxr2
XM_039821601.1 mRNA upstream 4983 7970017 ~ 7985215 (+) False fxr2
XM_039821551.1 mRNA upstream 265584 7722209 ~ 7724614 (+) True LOC120572296
XM_039823327.1 mRNA upstream 268542 7716604 ~ 7721656 (+) True LOC120573538
XM_039821543.1 mRNA upstream 274791 7704847 ~ 7715407 (+) False alpk1
XM_039823143.1 mRNA downstream 10345 8005773 ~ 8009869 (+) True LOC120573420
XM_039821644.1 mRNA downstream 23808 8019236 ~ 8020881 (+) True LOC120572361
XM_039821683.1 mRNA downstream 62227 8057655 ~ 8060449 (+) True LOC120572385
XM_039823331.1 mRNA downstream 310557 8305985 ~ 8314768 (+) True LOC120573542
XM_039821685.1 mRNA downstream 328347 8323775 ~ 8325576 (+) True LOC120572387
TU191297 other upstream 268561 7718020 ~ 7721637 (+) False LOC120573538
TU191293 other upstream 272869 7716614 ~ 7717329 (+) False LOC120573538
XR_005641634.1 other upstream 1349953 6588951 ~ 6640245 (+) False LOC120573071
unassigned_transcript_684 other upstream 1753124 6237003 ~ 6237074 (+) True trnaw-cca_15
unassigned_transcript_682 other upstream 1961485 6028640 ~ 6028713 (+) True trnat-agu_5
TU191556 other downstream 417251 8412679 ~ 8413237 (+) False LOC120573548
unassigned_transcript_686 other downstream 417253 8412681 ~ 8413334 (+) True LOC120573548
TU191535 other downstream 457512 8452940 ~ 8496546 (+) True LOC120572397
TU192067 other downstream 2523201 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2705757 10701185 ~ 10702028 (+) False LOC120573689

Expression Profile