RNA id: XM_039821606.1


Basic Information

Item Value
RNA id XM_039821606.1
length 2164
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC120572332
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5418473 ~ 5423102 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctgctagcatggctgtagactcttagtctaGTTTTTATTAGCTTATCACTCAACTAACTAATCTGTCTCCATACCTTGGCTACACATCTACTTCCCAGCTTTACACAAAAATAATACACACGGCTCTAGctagagaaaggagagagaaggggaatggaAATGGTAAATAAAATCATGTGATGGTTGACACTTTGCCGCATAATTGGAGCGCTGAAAACAAACTTTGATTTGAGGCACCTTCATTCAGGGACTACGGTCATCAGGCATTTGTAGCTTCACGTCACCGGCTTGACTACAAGTCTACAAGTCATTGAAAATGACTTGTAGACAGGAGATTACAGGTACAAATGATAATGCTTCACAACAGGTAGACCTGCAAGTGTTCTCTGAATAACAGACAGGATTAAATCAAAGTAACGGTGGTAATGAAAAGTGAAAGCATGTTGTATCATTGTTATGAAAGGGCTGGCACGCTGTGGTTAACACATGAGCATGCTGTGCAGACAAGGTAAATGCCACAGACAATCTTAACATTTCCTGTTTTGTTCTTGTGGCTGACACATCTTCACTTTACTGTTAAGAGGACAGACAATTTTCCCACACAAATATTTTATCTTTTTGCGCTGAGAGGACAAAACATAGCTACCGAGAGCAAAGGAAGACTGCGTTGTAACATCATCATATAGAAAACCAGAactcaatattgaaatcatccTATAGATAATCAGATTTGAACtattttttctactatttttcAGTCTTTTCGGCCAGAATGTTGCACCACCTTGGTGATTTTCCTCAAGGATTGATCAAACTCATTACAAAGTCTGTGGGCATTTTCCTGCTCATAGCCCTCTTCTTCATTCTGCAGTACTTATTCGATATGGATTTTCGTTGCTCATGCAGACCAGGTGTACATCTAAATGATGGAGTGTTCATGGCTGCCCCTCCTTTGATCCTCATCTCGATGGTCACCTTAATTGAGTCCGTCTACCAAATGGGGATGTTTTGTCGCAGCTGTAATTATTTTGTCAACAATTTCTGCACCTCTTTTGTGAAGTTTTGGATGAAATATCTTTTTCTGACTGCTGTTTGGGGGTCCACGGTTCTGTTTGATGGAGATTGGTACTTCTGCCTGCAAACAAACCTCAATAGCTCCCAGACCGGGATTCCTTGCAAGACAAATCAGACCTACGAGGAGACACTCATCGAAGCTGATTATAAGATTAAATCACGTGTCATTGGTTTCGGTGTAATCTCTGGAATTCTTTTGCTTTGGATCATCTTTGATTTTATAAAAGCCTGCCATATTAGAATGAGTATGTGGAAAAGGAGCTCTGTGTCTCGATACAACCTGTGTTGCCCTCCCTACTACAGATGGGTTTATGAAGGTCTTCTGTCAGAGGAGGTGAGCAGTCTTTTGAAAGACGAGCTAAGAAGAATAGCAAAAGAAAGAGCAGAACAACTCTGTAGAGGACATATTACGACTATTCATAGACACGAGACGCAGGGACAAAACCCAGATGGCAGGACTGTTCCCGACACAAATGCAGGTGGTGGCAGTGGCCATCCCACTGAAAAGAAAGATGACAGCACTGGTGAAATCAGTGGAGATCCCAATAGACCTCTCATTCGTGATAGTGAAAATAATGAGCAAGATAATATTTTTGATACCTGGCAGACAATTTCACTCTCCTCTTTCTACCTGTTGGATGAGGGGTTTGAGCAGGACAATTCATGAAGGGAGATTGATTCTGATGAGCAACAACTGTATTATATTGCCATAACCTATCAAACAATGTCACGGATCTAGTGCCTTCAAGAAACAAGCCAGTAAAAAAGGTACACTGTCATGTTTTTATAGCAGGGCCATGGAGCAATGATAGGTTTGTAAATTCTTTCCAAAGTAAACAttgaaaataactgaaaataatgTGTACATAATAACCAATCCATCATAAAACATGtgtacaaaatataataaatgatgatgtatttTCATGGAGTAGTTAGAATGACCCAGCTGCAGCATTACATGACAATTATTGCTTGCACATAAATGCacctataatatataatataatcataCCAACTATTTAATGTACGTTATCTGAAATAATAATATCTTTTTTCTTCAGGTTTTTATATTGTTCTGTATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190523 lncRNA downstream 210013 5208237 ~ 5208460 (-) True G141259
TU190491 lncRNA downstream 340257 5077628 ~ 5078216 (-) True G141233
TU190482 lncRNA downstream 382276 5035502 ~ 5036197 (-) True G141224
TU190480 lncRNA downstream 395388 5022593 ~ 5023085 (-) True G141222
TU190466 lncRNA downstream 470494 4945419 ~ 4947979 (-) False G141214
TU190665 lncRNA upstream 30667 5452292 ~ 5475138 (-) False nat16
TU190676 lncRNA upstream 138406 5560031 ~ 5564384 (-) False cd99l2
TU190699 lncRNA upstream 162537 5584162 ~ 5584526 (-) True G141394
TU190724 lncRNA upstream 289809 5711434 ~ 5711716 (-) True G141416
TU190757 lncRNA upstream 356158 5777783 ~ 5829468 (-) False G141439
XM_039822981.1 mRNA downstream 82756 5319797 ~ 5335717 (-) False LOC120573316
XM_039822979.1 mRNA downstream 82762 5319797 ~ 5335711 (-) False LOC120573316
XM_039822978.1 mRNA downstream 82762 5319797 ~ 5335711 (-) False LOC120573316
XM_039822980.1 mRNA downstream 82762 5319797 ~ 5335711 (-) True LOC120573316
XM_039822974.1 mRNA downstream 173516 5213138 ~ 5244957 (-) True LOC120573313
XM_039821609.1 mRNA upstream 2936 5424561 ~ 5475155 (-) False nat16
XM_039821608.1 mRNA upstream 2936 5424561 ~ 5475155 (-) True nat16
XM_039823376.1 mRNA upstream 138401 5560026 ~ 5582995 (-) True cd99l2
XM_039823379.1 mRNA upstream 195052 5616677 ~ 5620265 (-) True med11
XM_039823383.1 mRNA upstream 256591 5678216 ~ 5684645 (-) True rnaseka
TU190492 other downstream 318391 5099705 ~ 5100082 (-) True G141234
TU190477 other downstream 458468 4958679 ~ 4960005 (-) True G141219
TU190366 other downstream 754275 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 757362 4660621 ~ 4661111 (-) True G141159
TU190197 other downstream 1143199 4274651 ~ 4275274 (-) False G141027
TU190708 other upstream 175333 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 321934 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 321934 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 321934 5743559 ~ 5782623 (-) False G141439
TU190756 other upstream 356158 5777783 ~ 5843146 (-) True G141439

Expression Profile