RNA id: XM_039821618.1


Basic Information

Item Value
RNA id XM_039821618.1
length 7448
RNA type mRNA
GC content 0.40
exon number 10
gene id usp12b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 22526589 ~ 22550975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGCATTTTGACGGCACTATGCAGAAAGCTCTCCCGGAACTCTGCAGCCGCATCGGCTCTAATTTCAATATCGGGGTTCGGTCCAACATGGCGGCTTACGGATGGAAATACTGATGACAGTCCGAAAGATCGCCTCGATTTGTACGATGggCGCCAATGCCTCTGCCTTGGAAAAGGAGATTGGACCGGAACAGTTTCCCGTTAATGAACACTACTTTGGATTGGTCAACTTTGGCAACACCTGCTACTGTAACTCAGTGCTGCAGGCTCTGTATTTCTGTCGACCGTTCAGGGAGAAGGTGTTGGCGTACAAGgtGCAGCCGCGTCGTAAGGAGTCCCTCCTCACCTGTCTATCCGACCTGTTCAACAGCATTgccacacagaagaagaaagtcGGAGTCATCCCTCCCAAGAAATTCATCTCACgactgagaaaagaaaatgAGCTGTTTGACAACTACATGCAGCAGGACGCCCACGAATTCCTCAACTACCTCCTCAACACCATCGCAGACCTGCTGCAGGAGGAGAAGAGCCAGGAGCGACAGCAGAATGGAAAACTGGTGCAgaatggaggaggagggacaggtggaggaggaggaagtggaggaggaagtgaggGAGGAGAAGGGGAAGGAGGAAAGGAGACACAACAGACTTGGGTCCATGAGATTTTCCAGGGAACACTGACCAACGAGACTCGCTGCCTCAACTGTGAAGCTGTGAGCAGTAAAGACGAGGACTTCCTGGATCTGTCGGTGGATGTGGAGCAGAACACCTCCATCACTCACTGTCTCAGGGGCTTCAGCAACACAGAGACGTTATGTAGTGAATACAAATACTACTGTGAGCAGTGTCGCAGCAAACAGGAAGCCCAGAAAAGgATGAGGGTAAAGAAGCTACCGATGATCCTGGCCCTCCACCTGAAGCGCTTTAAATACATGGACCAGCTGCACCGCTACACCAAACTGTCCTATCGCGTTGTCTTCCCCCTGGAGCTGCGCCTCTTCAACACGTCCGGGGACGCCACCAACCCCGACCGCATGTACGACCTGGTGGCTGTCGTCGTACACTGTGGCAGTGGGCCAAACCGCGGACACTACATCACCATCGTCAAGAGCCACGGCTTCTGGCTGCTGTTTGATGACGACATCGTAGAGAAAATCGATGCTCAGGCGATCGAGGAGTTCTACGGTCTGACATCGGACATTTCCAAGAACTCTGAATCAGGATACATCCTGTTCTACCAGTCCAGAGACTGAACCAGACAGCGGTAAATCCCCCACAGACTGTCACTCAACAGAGGGGAAGGCTCTTATGGCTGCCACCGACTCCGCCCAGTAGGCTCACATAAGCGTCCAGGCTCTATATCCTGCAGGGGGAGCTTTGCACTGGTGCGCCACTCGGATCGGTTAAGACGTGCAGGTCGCATGCCAGCCTCCTGGATTACAACCATTCAAATCCTCTGAGCCCACACTGCaaaaagcactttaaaacaaaccaacaagATGGCTCAATCTGTAACACTCGCTTTGCATTGGGGCAACTGGGAAGACCGAGTAACACCAATCCAAGAGGCTGACATCGCCGTGTCCACAGTGATCCATTTTTGGAGGTAAAAGCCGTTTGGGACTGTTGAGATGATGTAGAGTAACCAAATCAACTGTTTCAGATGAGACACAGGATTGCTATCCTCCTCGTCACGGTAACCACCAGTGTCATCacagtcttctttttttttgtgtgtgtgtgtgtgtaatataccGTGCTAAATAAGCTTTAGGCTAACACACAGGTACCATGCGTTCACTCCCCAAAAATCCTTCTGCACACGGAGAAACTAATATCTGACAGCCTTGTTAAAAGCCCCACCTGCCAAAACCACTGACACAGCCTTTAGTGATTGAAAATCTTGAACGTGTACTTGGCGCGCAGCTCATTGAAGTTGCTAGTTTGCAGTGTTTGTATCATGAAGTGGTGCTAATAACGTATAGTGTTATAGAGCgtgaaatgaaaacaagccaccAGAGAGATGTGGAAGAATCCGATAGAGAGGCTCATTAGGTTAGTTTTTTACCAAGAAATTATCttgagtattaaaaaaaaaaaaaaaaaaggtaattggagagagaaaaaaaatacgaAATGCTGTCCAAAAATACAATTACATTAAAAGAGGGGCTCGGTTTCAGTAAATTGCAGTTAAAGTCAGTTTGTCCAATCTAGGCATTCTTCAGCAAAAATTGGCAAAAACAATGAGCCTCACAGATCACCAACAATCCTGTTTCAGTTTTTAAAGGCTAGCTAGTAAAGCAGTGCGTGAAAGTGGCTGGTcaaagttttagttttaaaataACTGGTGTGTAGTGCCATTACGGGTCATGTTTTGTGCCACAGCAGTTAAAAAGATAAACATGAACTAACTTTATTTTCAAGCGGGCTTTTCGTGGTTATGACAGCAAGCACAGTCTTTCAAAGATCTGTGTATaacattttatgactttataAAATTCCAGAATATGCACATTTGTACCATTATTAAAgggacacatacagagacaaatactttttcctttcctttaagTCAGTTATGACACCCAAACTGTCACACTACGTACAGGTTGAATGTCGGCATTTAgtgttttgtccttttttgttcCTTATTAATGCTTTATTTCCGGAGATCTAACTCTTAACACCTCCATACATATGCCGATGCTGCAGCTGGTTCAGTACACCTCGTTATATCAGCCACCAATCACACGCCGGCAAATTCTGACTCTGGCTTAAGCGTTtctcctgcagctgcagctctGGCAGGCAGACCTTTTACATAACATGTTTTTCACTCCAGAATCTTAAATTGGAGCGCTCAGTAATGCTGAGTGATGCTAACGGTCTGCTGATGTGGAGCTCGTCCACTGTTTGTTGACGGCATGGCATATTTCATGCAGTACGGCGAAAACTGCTGAGACACAGGTCTCAGTGGTTTTAAAATGGATTCCTCTCCTCCATATCTTTtaatcctcctgttgtcctcgggtcaaatttggccCGTTTTCAAAagatttgggtttctttcaagcaAATTGCAAAAAAATTACACGGATGGTTTCTATAGCGACGAGTATGATTAATGATCAGTTCCCTACTTTCATTTAATTGTAATCAATCTCTAGCACAAAGGGCAAGGTTTCCAGATGGTAACAACTTCTGTTTTAATGTTGAGACATCCTAttttaacaaatacaaatgcgttacattacattacattttaccTTCTCACAAACGAAGGGGATGTTTTCAAAGTTCTCCTACAAAGcaaaaaatattcaatttacacTGATATAAAAAATACCACTTCCTCACAAAATTGAGAAGCTATAGCCAAtaagtgtttgccatttttactggataagtaactttaatttgtatctgattatcaaaataattgtgGAATACATTTGTTCTGTCAATTGACCAGTTAATCGACTAATCGTTTGAGCTCTGATTGTTGCAAGGAAGAGTTGTAGTCATGCTGAGATAAGAGTGTAATTAATGCTTTCAAATGGGTTTGAATTTTTCTAAGGAAAGGAGAAACGGGAGCCATTTTAAAGCCTTTACTTGTTAACTCGAGCCGACTGATGGGCAACAACCTCCTTTATCAGctctgttgtttttattatttaacacacaaacaaaccaaatgtattttttttttagacttgttttttaaagtgttttacaCCGCCAAGCTCGTGAGGCTCCACCAAACTGGGCTGTCCAAGGTTAACAAACAAGCTCACCCTGTCACTCTTTGTAACAGAGCTGCAGCAGATGGAAAGAGAACGGAAACATGCCTGTAGCTTTTAAAGATGTTTATATTCTACAGTAGTTGAGTTGCCCGGGCAATGGGTCAACTATTATCTGAATGTTAAatgtacaataaaataaaaatagggcTGCTGCTACTGCTTGACCTGTAAAACACCATATGGAGTGGGGCATGTCTCAATAATCTAAAGTTGCTCTCTCTCCTGCTAAAACAAGAAAAGCACTTTTACAACATTCATTTGTAACAAATACTATTTCTACATACATTATTCtgaaattgttttatttcctttggAGTCTTATTTTGATAAGCAAAAGTAATGGCGGTCAGGGTAATCTGTTGCCCCAATTTAGTTTGTATCCAAACTCTTAGTCACTcctgtttttagttttgtgtgGCAGTTAAAATCTGTTTATCACGACGACAGAAGTGTGCGTTTTAAGTTGTTCAAGAATATCTCACTTGTTTACTTAGTTTTCAAAACGCCGTAAAGGACTGAAAAGGAAGGGAGCAACTTCAGATGACGCGTCCCAAAACACTTTACACTGGGTTGAGGCTTTGAAGTCAACACTATTTTATTTTCCTGTCTTTGCTacccttaaagctatagtgcgtagtttctgtctcccccatgaggaattttaagtaatgacatcaattctgtcggtgcatccacatgCCACAAGCCTTCTGTGAATGCGCTTCACCCCCagtcctcctccacacagttgctagtagccaaggaggacacggaggataaaaaaaactcttcaaaagaggtaattatcttcactcaagtttctcCGCGCGAAAGTCGCTGAACGACACCATTTTCTAAACCTTgcaatgctgagaaatacagagagagttttgtccagctgatagtcttaattagctttgtatcaattcatttggcttgaatgtaacggacgttcattattatCAAAAaattacgcactaaagctttaaactcAACTAATCTTCATGAAAGGAAGATATTTTGCGTGGTGTTAAATCTGTTTTGGGATCAATCCACTTCGTTTCCATAAATTCTACAATTTTTTGAAAGTCAGACAACCTAGTTTACAGGTTATTTCCATGCCCCAACAGAAACTGTGGACTTATAAGCTACCTTAATGTATTTACCAAGTGATGTGTTCATATGTTAAGCTTTTTAATGAGTTTTCATTTATTCATCATGTaaatcgacaaaaacaagcacaaaAGCACATTATTTGGGGGATAATAGTCCACAGATTCAGTTTGAAGCAGGTTATATCTGTCTTTTAATGAAATGCAGTTTCATGGAAATCATTGGTCCCCAAAACTGTACGTGTCTGTAATCAACAAGACTGGTTGAACATTTTGGCTGAAACAAAGctcttttttcatttaaatattataaatattattattattatgaatgtCTGTTATCTTCTTTTTCTTAGATGTTTCATTGTTTTTGATATATTTCACTAATTTACTAGTCTACCATTCATGTGTAGGCAGCTCTGGAAAGCCTAttcaaagattgttttggtTCAATTTGGGAGTATGTAACGAGAGATGTTGATGTGTACATAAATACAGATATTATTATTGGAATATAAATTGCTTGCTTGAAATAATCAGCAGACCTAGATCAAAAAATGTGGATATTATGtctcaaaatactttttattcTGTTAATAAATCATATGCCTGGTGCTCAAAAATTAACAACCCACCCATCTGGCATCCCAGGCAGCCTAAACCAAACAGCCCCAAAGTAAATTAATTCATATTTAATCTGACTGGTCACACTATAGTACACAGAAAAAACTGACTGATTTCATTAAGATACAGTTACTATGAAGAAAACTAAAAGTTCTCCatacaacaaactgctgtgGAGAGAGAAACTGACCAAAACTGtcctgtgtgtcactgtgttaaAGGAAAAATCCACTTTAAGTACACAAAAATCAACTGTTGGTTGGTTCTTCTTGTCTCTCGGTTGGTTCTTCTTGTCTCTCAGCCTGTTTTATAGTTTGGTGTTTAGTTTACTTTTTCCTGTGAATAACTAGTCAAATGTTGATGACTTGGTGGCACCTTGAGAAATGTTGTTGATAATCACAATGTTGAAGAGCATTAAAAGATGACTATATTGgcttcaccaaaaaaaaaaaatattttcagtttcaAAAAGTATACTTCAGTAGCAAGCTTTAAATGGGTCTTCTTTTTTTAGATCAATTTCCAATACTGCTTCCATTGTAATATCAGAGTTCCAGTACTGATAcccaatctttttttcttttttttttaactaaaactTTTTACTAGAGTCCTGATAAGCTGATAGTCTAACAGCCGATCTTGTTTTATTACAGATGTATTGGTATTGTATGTAAGTCCAAGTAATACACAACTGCAGTACAGAAATGGCAGTGATATGTTTGAGGTTGTTTAGAAAGTTGTTTCAGACCCACggaatttatttttcattcgTAAAATGTTCCAGTCAATACATAATCTTGATCAGAGGCAAGAGAGAGACAAGCAAATATATATTGTCTCTAATATTGATATTAGCCGTAAATATCAAGTATCGGTAAAGCTAAATAACTTACTtagttttttgtatttgtgtacaATAATGAAAGTAACCTAAATGAATTACAGCAAAAGTAAAGTCATCACCTTATCTggtcaaaaaatacaaaaacgaCTATTAATCGGACCAATCATTTGGTATTGAGTTTTCAGTACTTTATGTACTGGATTCAAAAATCGCATTACCTGGATACTCATGCCACATTAAACTGGTCATCAACATTGTGATTATTCACCTAATCAGAGGCTTGAGGACATTGTTTCAAATCAACAAATGatcatttattgattttattcaTGATTTAAAATAGAATGTCATCTGCAGAGAGTGAGAGCTTCTTTCTAGAGCTTACGCTAACATTAACCAAACAAATAACCGGGAGATTCTCATTTGAGAGATTTCATGTATTAGATATGGGAAAGTAAATGAGCTGGGTTGGGGGAAACCGGAAGCTCCAACATTTTCTCACCAAATAACTAATTAAATAAACTGACATCTGCGGGTGGATTTTTCCTTTTAACAGTTTCAGTTCTGTCTTCTGAAATGTTCCTTCAGGGCTTCGGACGTCCACATCTTCCCCTACTTTTCACTCACGAAGAATGTAAATGTTTTGAAACCAGTATGTTGACGGACGGAAAGTGACTCAATGTGTCATTAACACTGATAATGTACATTGTAACTAACTCATGTGCAAAGAGACAGCAGCCTAACGGACAACAAACctaattatttatattattctaAATAAACTAAGGATTAAAACAGTTCCACACCTTCAGAATAGATTCAAACTCCTGGGGCTTCTCAGCTTGCTACGAAGGGATCGGAAGGAAAGAATTGTATCCTTCTCTTGAGTTGTCAAGTGTTTGTGtgggctgctgctgccgctgcacATACTGCTGTCTGAAGTTCATTCTGAATACATGTAGATGCAGTGAAGTTTGGGGATGAGGGCTGGTTCTATTGGTGTCCAAActgtttgaaataaaacacaaactggTTTTTAAGATGGAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196195 lncRNA downstream 54764 22464549 ~ 22471825 (-) True G145395
XR_005641481.1 lncRNA downstream 265652 22260461 ~ 22260937 (-) True LOC120572729
TU196135 lncRNA downstream 269311 22232334 ~ 22257278 (-) True G145345
TU196134 lncRNA downstream 269311 22247223 ~ 22257278 (-) False G145345
TU196132 lncRNA downstream 295275 22231072 ~ 22231314 (-) True G145343
XR_005641702.1 lncRNA upstream 56665 22607640 ~ 22608359 (-) True LOC120573387
XR_005641666.1 lncRNA upstream 193973 22744948 ~ 22746278 (-) True LOC120573226
TU196330 lncRNA upstream 263595 22814570 ~ 22814816 (-) True G145508
TU196332 lncRNA upstream 266706 22817681 ~ 22818189 (-) True G145510
TU196337 lncRNA upstream 286193 22837168 ~ 22839383 (-) True G145514
XM_039822662.1 mRNA downstream 326540 22164235 ~ 22200049 (-) False phka1a
XM_039822661.1 mRNA downstream 326540 22164235 ~ 22200049 (-) False phka1a
XM_039822660.1 mRNA downstream 326540 22164235 ~ 22200049 (-) False phka1a
XM_039822659.1 mRNA downstream 326540 22164235 ~ 22200049 (-) False phka1a
XM_039822658.1 mRNA downstream 326540 22164235 ~ 22200049 (-) False phka1a
XM_039823471.1 mRNA upstream 19821 22570796 ~ 22573146 (-) False LOC120573632
XM_039823470.1 mRNA upstream 19821 22570796 ~ 22573146 (-) True LOC120573632
XM_039823473.1 mRNA upstream 22576 22573551 ~ 22580271 (-) True LOC120573633
XM_039823472.1 mRNA upstream 22576 22573551 ~ 22580249 (-) False LOC120573633
XM_039823390.1 mRNA upstream 30345 22581320 ~ 22605991 (-) True LOC120573582
TU196131 other downstream 296087 22230059 ~ 22230502 (-) True G145342
TU196109 other downstream 400129 22094907 ~ 22126460 (-) False shroom4
TU196045 other downstream 547163 21884755 ~ 21979426 (-) True ccnb3
TU196042 other downstream 636517 21884755 ~ 21890072 (-) False ccnb3
TU196331 other upstream 263931 22814906 ~ 22817623 (-) True G145509
XR_005641480.1 other upstream 1504025 24055000 ~ 24075036 (-) False LOC120572715
XR_005641478.1 other upstream 1504025 24055000 ~ 24075036 (-) False LOC120572715
XR_005641479.1 other upstream 1506953 24057928 ~ 24075036 (-) False LOC120572715
XR_005641396.1 other upstream 1581251 24132226 ~ 24140420 (-) False LOC120572219

Expression Profile