RNA id: XM_039821644.1


Basic Information

Item Value
RNA id XM_039821644.1
length 830
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120572361
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8019236 ~ 8020881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACTATCTTTGCAGTGAAACGATTAAACGCAGAATGAGGAACTTCACCTTGATAACAGCTTTACTTCTCTGCAGCCTTGgcTGGATCTCTGTCTCAGCTTCTGAGTCTCACACTGTGGAGGTCCAGTCTGGTGGAGACATCACTCTGATGTGCTCCAACATTTCCAGGACTCCAACTACAACAGAATGGTTCAGAGTGATCAACAGAACCAAGCTCAGCTGTGTCTCCTCTATGTACAAGTCTGATAGCAATGCCTCGTACTGTGATGGATTTCAAAATAGATTTGAGATGAGCTCCAACATCTTTACTGTCTTTCTTAACATCACAAGAGTAAATTTATCTGACTCTGGACTGTATTTCTGTGGATGTAACCAAAGCAACCATACAGTTCTTGTCAATGCAACATATCTACAAGTCCAAGttGATGGTGTAAATCATGTTCGAGGGGATTATAATGAAAAGGACTCTGATGGAATGACAAACGTCATGAATGTGATCCTGACTGTTCTGACTGTTTTCCTCACCATAGTCGTCATTATTCTGACTGTTAAAATCAGGAAACTCCAGACAGCTGTGAATGAAGAACAGCAGCCAGAAAGAAACAAGGATCTGGGCTCAGATGAACTGAACTACGCAGCTATAAATTTCCAGGCGCAACCCAAAAGAAGCGGCAGGCCtgcatcagagagagagatggagcaacATGCTGTGAATGCTGCCAGCAGATAGACACAAGCAACAATAGGACTGCAACGCTCCATGTAACTGATGCTTTCTCATATTCATCTGCTGCAAGAATCAATggcaacattcttttattaaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191337 lncRNA upstream 81746 7840930 ~ 7937490 (+) True G141857
TU191356 lncRNA upstream 123023 7895851 ~ 7896213 (+) True G141871
TU191354 lncRNA upstream 133589 7884822 ~ 7885647 (+) True G141869
TU191350 lncRNA upstream 143296 7874406 ~ 7875940 (+) True G141866
TU191306 lncRNA upstream 236201 7750283 ~ 7783035 (+) True G141835
TU191464 lncRNA downstream 38325 8059206 ~ 8060478 (+) False LOC120572385
TU191466 lncRNA downstream 40178 8061059 ~ 8061293 (+) True G141942
TU191467 lncRNA downstream 40518 8061399 ~ 8061861 (+) True G141943
TU191472 lncRNA downstream 48905 8069786 ~ 8073974 (+) True LOC120572412
XR_005641445.1 lncRNA downstream 49301 8070182 ~ 8073990 (+) False LOC120572412
XM_039823143.1 mRNA upstream 9367 8005773 ~ 8009869 (+) True LOC120573420
XM_039821603.1 mRNA upstream 23808 7990198 ~ 7995428 (+) False LOC120572330
XM_039821602.1 mRNA upstream 25809 7990198 ~ 7993427 (+) True LOC120572330
XM_039821600.1 mRNA upstream 34021 7970017 ~ 7985215 (+) True fxr2
XM_039821601.1 mRNA upstream 34021 7970017 ~ 7985215 (+) False fxr2
XM_039821683.1 mRNA downstream 36774 8057655 ~ 8060449 (+) True LOC120572385
XM_039823331.1 mRNA downstream 285104 8305985 ~ 8314768 (+) True LOC120573542
XM_039821685.1 mRNA downstream 302894 8323775 ~ 8325576 (+) True LOC120572387
XM_039823334.1 mRNA downstream 347259 8368140 ~ 8370820 (+) True LOC120573544
XM_039823338.1 mRNA downstream 373604 8394485 ~ 8400539 (+) True LOC120573547
XR_005641421.1 other upstream 21528 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other upstream 21529 7990198 ~ 7997707 (+) False LOC120572330
TU191297 other upstream 297599 7718020 ~ 7721637 (+) False LOC120573538
TU191293 other upstream 301907 7716614 ~ 7717329 (+) False LOC120573538
XR_005641634.1 other upstream 1378991 6588951 ~ 6640245 (+) False LOC120573071
TU191556 other downstream 391798 8412679 ~ 8413237 (+) False LOC120573548
unassigned_transcript_686 other downstream 391800 8412681 ~ 8413334 (+) True LOC120573548
TU191535 other downstream 432059 8452940 ~ 8496546 (+) True LOC120572397
TU192067 other downstream 2497748 10518629 ~ 10519736 (+) False tmem88b
XR_005641749.1 other downstream 2680304 10701185 ~ 10702028 (+) False LOC120573689

Expression Profile