RNA id: XM_039821807.1


Basic Information

Item Value
RNA id XM_039821807.1
length 2604
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120572473
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19529160 ~ 19553841 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttctttttatatattcaCTCATGACAAATCACCAACTGCATCACTTTTCACCACATCCTCTTTCTGTGTTCTGTTTTGTCAGTGTATGATAAAtacactgaataaaaaaaacactttttactCTGTATCTTGTGTTGGTTTCTAAACTGGTCCACTTTATTTACCGGAGAGTCTGTTACCTTCATATGTGACATGAGGGAAGGAGAAGACACCGACTGGTATTACTCAATCTGGAAGGATGGTGGAGAATTTATCCGCTCCAAGAACTATATATTACAACCACTAGTTATAGGTTACAGTGGTGAATACCAGTGCTTTGGTGATCACAAAATCTCCCCACCTTTTAGAAAAGAAAGTAATAAAGTCTCTCTAACTGTATCAGCAAACAAACCCCGGGCCGAACTGAGTGCTGACAACAGAGACATTCCAGTAGGGGGCAGTATGATCCTGACCTGCTCTGTGaacccatcatcatcatcatcatcttcatcatcatcatcaacatcatctgGTTGGAAATACTTCTGGTACAGAGGAGAGAAAACCTCTGAACCCCTGACCACACAGGATGTTGTCTTCCTCTCAACTGGACAAATCAGTGTCTCAGTAGGAGGAGTCTACTCgtgcagaggaggaagaggacagcCTGATTACTACACAGAGTACAGTGATTCAATCATTGTCAACAAGAAATTTGCAAACAAGGCTGTTGTGACTCTTCAACCAAACTGGTCTGAAATATACGAAGGAGAGAAGCTCACTCTCAGATGTGGGATCACAGATGAAGGAGACTCTGAGTGGGAGTATGAATGGACAACAACCAGCTCAATAAAACCTTCAAATCAAAATGAACACCATATTAGATCTGCTGATGCATCCCACAGTGGGACCTACAGCTGTAAGGGCAGAATGAAAAGTGCACAGCAGTCTTCAACAGAGTGGAGTGATCCCATTACATTGACAGTATCAAACAATAAACCTCAGCCTGTCCTCACTGTGTCTCCATCATGGCTGAGTCCTGGAGCCTCAGTAACTCTGAGCTGCAGTGTTAAAGATCCATCTGCAGGATGGAGGTTCTACTGGTATAAGGCTGTTCCCAGACTGTCAGACATCTCCTACAGCTATGATCTGCTACCTGGCAGCACCAATGGGACTGAACAGGATTCCTACATTGTtgatggacagacacacacagcaggataTGTGTGCAGAGCTGCAAGAGGAGATCCAGTGTTTTACACTCGTTACAGTGGACCAAAGTTTGTCTGGTCTGGAGATGTTCATCCAGCAGCGTCTCTCACAGTGGGTCCTGACAGATCGCAGCACTTTGACCAAGAGTCTCTGTCACTGAGCTGTGAGGGAAACTCCACTGAGTGGAGAGTGAAGATGTTTAATGAACCTAGCACTGTGTATCCCTGTTCTATCTTTGCGAAAATGAATGGATCTACATGCAACATAGACCGTTTCTGGTTTAGTGGAGTGTACTGGTGTGAGTCTGAAACAGGACAGATCAGTAATGCAATCAACATCACTATACAGAATGGTGATATTATCCTGGTGAGCCCTGTCCTTCCTGTGGCTGAGGGACATTCTGTCACTCTTGGCTGCAAGTTGAATACAGAAAATGTTCTTTATAATGTGGATTTCTATAAAAATGACGAACTCATCCAAAAAGGTACCAGAGGGGAGCTGACTATCTCTGCAGTGTCAAAGTCACATGAAGGCTTTTATAAATGTGAAGGAAATGAGTCACCAGGTCGGAGGAGTCAGACGTCACAAGAGAGTTGGATGTCAGTAAAACcagcGTCCAGGCTTGAAGAAATCTCTCCATTTCCTGTGCTGTTGGTTGTTGGGATGGTTGGTGGAGTTTTACTGATTCTTCTCCTGCTGCTGTTTCTGTATCGCTACAGAAAGTCAAACGATTCATGCTTCAGCAGGTCTCAGAGCACCAATCAGAGCCCTGCTACAGACCACATGAACAACCAGGTGGACGCTCAATACGCTTCTCTTCTCCATGGTGATGCTTGTCTCTATGAAACAATCAAAGGCCCTGAAGAACCTGGACATGGGAGGAATAAAGAACCAGAGGACAGCCTTTAATCCAATGTGACGATAGGTTCAGCTGCAGATCAATAAAGACATCTGAGGACAAAACCAATGGAATGGGTGACAACTTATAGGACCACACTGTTGTTTAAGCAGTATTTGCAACTTAAAGAAAAAGTGTGATTATTGTGTGCACCTCTGCTATTAGACATTATTTTGTACAGTTGACCTTATAGCAGATAATTGGAAGGAAATACATCATATGGCTTTAATCGTTTGTTGTAATTGGTGAAAAGACTACAGAGttttacataaaataattatatacCAACTTGTCTTGGATGGACACAGAACTCACATTACACTGTGTCCAAGACAAACTTGCTGGACAATAACAGATGCCGGTTAATTTAGGCTTTACTTACCTGTATCTTTCTTGGCTTGAGTGTGGGAGTGTACTTGGGCATATAACAGGTTGTCGTCTAAAACAGAAGCCACATTTTGGGTTATATATGAATGGATGGATCGATAGGCAGAATAAAGCTAAGTTAAATGCG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194935 lncRNA downstream 277552 19247950 ~ 19251608 (-) False prkd4
TU194954 lncRNA downstream 293636 19234321 ~ 19235524 (-) True G144476
TU194880 lncRNA downstream 428323 19100428 ~ 19100837 (-) True G144425
TU194879 lncRNA downstream 428930 19099980 ~ 19100230 (-) True G144424
TU194878 lncRNA downstream 429963 19098894 ~ 19099197 (-) True G144423
TU195108 lncRNA upstream 112880 19666458 ~ 19667497 (-) True G144585
TU195330 lncRNA upstream 163406 19716984 ~ 19815341 (-) True G144735
XR_005641743.1 lncRNA upstream 185780 19739358 ~ 19742781 (-) True LOC120573676
XR_005641745.1 lncRNA upstream 192927 19746505 ~ 19746825 (-) True LOC120573678
XR_005641744.1 lncRNA upstream 201642 19755220 ~ 19755722 (-) True LOC120573677
XM_039821810.1 mRNA downstream 5170 19512028 ~ 19523990 (-) True LOC120572474
XM_039823439.1 mRNA downstream 122802 19403481 ~ 19406358 (-) True pnp5a
XM_039822121.1 mRNA downstream 159525 19357698 ~ 19369635 (-) False sf3b2
XM_039822119.1 mRNA downstream 159622 19357363 ~ 19369538 (-) True sf3b2
XM_039822006.1 mRNA downstream 175854 19282933 ~ 19353306 (-) True LOC120572670
XM_039821860.1 mRNA upstream 33552 19587130 ~ 19588077 (-) True LOC120572523
XM_039821372.1 mRNA upstream 103505 19657083 ~ 19665792 (-) False si:cabz01074946.1
XM_039823388.1 mRNA upstream 114121 19667699 ~ 19677622 (-) True LOC120573581
XM_039822512.1 mRNA upstream 125677 19679255 ~ 19702223 (-) True arhgef11
XM_039821505.1 mRNA upstream 326762 19880340 ~ 19894923 (-) False LOC120572266
TU194942 other downstream 175868 19350510 ~ 19353292 (-) False LOC120572670
unassigned_transcript_712 other downstream 463919 19065160 ~ 19065241 (-) True trnas-gcu_6
unassigned_transcript_711 other downstream 557697 18971392 ~ 18971463 (-) True trnad-guc_7
unassigned_transcript_710 other downstream 562147 18966942 ~ 18967013 (-) True trnad-guc_6
unassigned_transcript_709 other downstream 563723 18965366 ~ 18965437 (-) True trnad-guc_5
XR_005641381.1 other upstream 103505 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU195325 other upstream 223102 19776680 ~ 19797530 (-) True G144730
XR_005641682.1 other upstream 1273705 20827283 ~ 20863889 (-) False LOC120573300
TU195751 other upstream 1362063 20915641 ~ 20917175 (-) False LOC120573168
TU195934 other upstream 1810404 21363982 ~ 21367646 (-) False si:dkey-172j4.3

Expression Profile