RNA id: XM_039821852.1


Basic Information

Item Value
RNA id XM_039821852.1
length 1386
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC120572515
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18084380 ~ 18095954 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACTGTCCAGTACAGAGATGCCCTGTGCCTGGGTTCTTCCGAGCAAAACTGGCAAGGTGCGAAGAAATATGCAACATCTCATTCATGAAGAAGAAGACCGTAACATACTCCCCACTACCCAGCATTCCTGTCCCTACAGAAGAGGAGTTTATGGACTTCTACCAAAAGctgtatgaatgtgatgttCAGGAAGAAAGTAGTAAGGGGACTGCTATCTTGTCTGTGATCGAGGGCCACTCTCACAGATACAAACCAAAGACCCTTCAACTGAATTTGCCAACACCACTTTCTAAATTATATTCAAAGGCAAAGTTGCATAATGATTTGTCGTCCTTACTAGTAGAGAGTGAAAGCATCTTTGACAATCTTCAGATAACAGAGCAACAGCCTAATGTGTTGGCCTACACTGTCCACTGTCAGACGGACACTCATGGACGACCTGTGGCCGGGGTGGGTGTCATCTGCAGGGACAGTCTGACAGGAGCCACTTACAGCCACCAGGCTATTGTACAGACTATCATCCATGAGCTGTTTCATACACTTGGTTTCTCTAAAGAGCTCTTCCACACCTGGAGAGACTGTTCATCCAAGTCTCAAgTGGCTGCTGGCTGTTCTCCTCGAGGCAAAGTGAGTCATTCTGATAGATCGGGCCAGATGAGGATTTACACCCCATCCCTCATTTCCACCTTGCAGAAGCACCTGGCATCCACTGACCCTGAGCTAGGGGGGCCGCTAGAGAACCTGGATGTTGCTCCAGGCAGAGTGTCCTCTCACTGGGAGTCCCGGGTCCTGCAGGGCTCCATCATGGCACCGGTGCTGGGGGACTCGACCACAGTCCGGATCGACCCGGTCACCTTGGCTGCATTACAGGATACGGGCTGGTACACTGTTGACCTGAACCAGGCACAGAGTCTAGTCTGGGGAGATGgtGAAGGAGCTACGTTTGGTTCCCTGTCAACCTGTCGGAACAAGTCTTCATCTTTTTTCTGCACTGGCAGTGGATTTGGGTGTCATTATCTTCACCTCCACAAGGGGGAGTGCCAGACTGATCAACACCTGGAGGGATGTCGAGTGTATAAACCCCTCAAGAATGGAAGTGAATGTTGGATAGAGAAAAATGGCAGAGACGAAgatctggggggggggggggggggggAAGCAGACGGAGCTCAGCAGCTcgcagctctgtggagggaCGTTGTTACAGACACAGGTACCGGGAGCTGGTCGCCCCTCAGACTCCCTGCAGAGCTCCCTGTGGCCTCGGTGCTCGGCGtcactgctgctgtgtgtctcctGGCTGCAGCTCTGCTGTCTCTCAGGAAACGTTGCTCCTGCAAGGTCCGGATCCACACTGCCCCAGAGGATCACACTGATCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194348 lncRNA downstream 23827 17973899 ~ 18060553 (-) False LOC120573700
TU194367 lncRNA downstream 65074 18016249 ~ 18019306 (-) True G144037
XR_005641476.1 lncRNA downstream 81909 17992145 ~ 18002471 (-) True LOC120572704
TU194329 lncRNA downstream 194728 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 230566 17852399 ~ 17853814 (-) False smim20
TU194570 lncRNA upstream 73339 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 152489 18248443 ~ 18250057 (-) True LOC120573605
TU194639 lncRNA upstream 440193 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 604255 18700209 ~ 18700555 (-) True G144275
TU194729 lncRNA upstream 732510 18828464 ~ 18830315 (-) True G144303
XM_039823608.1 mRNA downstream 3576 18060176 ~ 18080804 (-) False LOC120573700
XM_039823612.1 mRNA downstream 10835 18063276 ~ 18073545 (-) False LOC120573700
XM_039823610.1 mRNA downstream 10836 18060176 ~ 18073544 (-) False LOC120573700
XM_039823609.1 mRNA downstream 10836 18060176 ~ 18073544 (-) False LOC120573700
XM_039823607.1 mRNA downstream 10836 18060176 ~ 18073544 (-) True LOC120573700
XM_039823614.1 mRNA upstream 30810 18126764 ~ 18133498 (-) False LOC120573701
XM_039823613.1 mRNA upstream 30810 18126764 ~ 18133498 (-) True LOC120573701
XM_039823615.1 mRNA upstream 30810 18126764 ~ 18133488 (-) False LOC120573701
XM_039823398.1 mRNA upstream 39465 18135419 ~ 18143670 (-) True lrp10
XM_039822636.1 mRNA upstream 73260 18169214 ~ 18173027 (-) True mrpl52
TU194343 other downstream 23225 18060192 ~ 18061155 (-) False LOC120573700
XR_005641649.1 other downstream 263303 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 331391 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 834826 17247951 ~ 17249554 (-) False LOC120572513
TU194399 other upstream 17898 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 499148 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 598745 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 600142 18696096 ~ 18696169 (-) True trnan-guu_12
unassigned_transcript_704 other upstream 602308 18698262 ~ 18698335 (-) True trnan-guu_13

Expression Profile