RNA id: XM_039821863.1



Basic Information


Item Value
RNA id XM_039821863.1
length 522
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120572532
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 21131568 ~ 21132550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGACAAGGGACGACGCTCTGGCCTACTGCAGGAGGCACTACACAGACCTGGCCAGTGTGAGAAACGAAACTGAGAATACAATGATCCAGAATGTTGTAAGTGGAAACAGAGTTTGGATCGGCCTGTACAGATACACCTGGAGATGGTGGTCAGATGGCACTTCCCGATCATTCAGTTACTGGGCAGATGGACACCCGGTAAGTTTAACTGAGAGCTGTGCTGCAAGTGTGATCAACGCTACTCACCTTGGAAAGTGGGTGGAAAATCACTGTAACGAAAACCTTCATTTCATATGCCAAAACAATAGGACGCAGTTGTTTAATGTTAAGCTGACAGCACTGAAAACCACAATCGACTTGAATGTCCCTGCTGTGACGGACGCCATCTTGAATCGgATCAAAGAGAAGCTGATGGAGGAGGGGATTACAAGAGATTTCAAAATTTTCTGGATGAAGAAGCCGGGCAAAAACATCTTCCACAAAGAAGAGGAGAATGCAGATGCAGTGGAGGCGGAAGTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195810 lncRNA downstream 30762 21100149 ~ 21100806 (-) False G145106
TU195809 lncRNA downstream 73769 21055824 ~ 21057799 (-) True G145106
TU195827 lncRNA downstream 153552 20976655 ~ 20978016 (-) True G145112
TU195755 lncRNA downstream 199847 20931066 ~ 20931721 (-) True G145076
TU195688 lncRNA downstream 264480 20864825 ~ 20867088 (-) False nop10
TU195863 lncRNA upstream 26352 21158902 ~ 21161476 (-) True G145141
TU195936 lncRNA upstream 299175 21431725 ~ 21437860 (-) False si:dkey-172j4.3
TU195944 lncRNA upstream 342833 21475383 ~ 21479973 (-) True G145213
TU196111 lncRNA upstream 909876 22042426 ~ 22042693 (-) True G145330
TU196108 lncRNA upstream 946584 22079134 ~ 22079491 (-) True G145327
XM_039821423.1 mRNA downstream 4499 21120201 ~ 21127069 (-) True LOC120572218
XM_039822498.1 mRNA downstream 61486 21065168 ~ 21070082 (-) True LOC120573066
XM_039822497.1 mRNA downstream 81280 21045556 ~ 21050288 (-) True LOC120573065
XM_039821558.1 mRNA downstream 162157 20963708 ~ 20969411 (-) False si:dkeyp-74b6.2
XM_039821557.1 mRNA downstream 162173 20963708 ~ 20969395 (-) True si:dkeyp-74b6.2
XM_039822776.1 mRNA upstream 34949 21167499 ~ 21184457 (-) True rab39bb
XM_039822109.1 mRNA upstream 218692 21351242 ~ 21438456 (-) False si:dkey-172j4.3
XM_039822111.1 mRNA upstream 218692 21351242 ~ 21437915 (-) False si:dkey-172j4.3
XM_039822110.1 mRNA upstream 218692 21351242 ~ 21437914 (-) True si:dkey-172j4.3
XM_039822112.1 mRNA upstream 218692 21351242 ~ 21393506 (-) False si:dkey-172j4.3
TU195751 other downstream 214393 20915641 ~ 20917175 (-) False LOC120573168
XR_005641682.1 other downstream 267679 20827283 ~ 20863889 (-) False LOC120573300
TU195325 other downstream 1334038 19776680 ~ 19797530 (-) True G144730
XR_005641381.1 other downstream 1465776 19657083 ~ 19665792 (-) True si:cabz01074946.1
TU194942 other downstream 1778276 19350510 ~ 19353292 (-) False LOC120572670
TU195934 other upstream 231432 21363982 ~ 21367646 (-) False si:dkey-172j4.3
TU195935 other upstream 249716 21382266 ~ 21393483 (-) False si:dkey-172j4.3
TU195937 other upstream 271305 21403855 ~ 21434195 (-) True G145209
TU196042 other upstream 752205 21884755 ~ 21890072 (-) False ccnb3
TU196043 other upstream 752205 21884755 ~ 21890072 (-) False ccnb3

Expression Profile