RNA id: XM_039821959.1


Basic Information

Item Value
RNA id XM_039821959.1
length 1507
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120572642
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 36718486 ~ 36720358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTGCAATGAAGATGGTAAGAtggtacctagaccactgtcaacactgtgacaaatccttcacatCATCTGAacatttaaagattcatcagagagttcatACTGGAGAGAATctacacagctgtgatcaatgtggggcagctttcacaagAAATGGTAACCTAAAAtcacatcaacgcattcacactggagagaagccgtacagctgtgatcaatgtgggaaaacattttctcagagTGGCAACCTTAAAAGTCACCAACACATCCACACTGGAGAAAAGCCatacagctgtgaacaatgtggtaAAACGTTTTCTGAGAGTAATAGCTTTAAAAGACACCAGCGCATTCATACTGGAGAAAAGctgtactggtgtgaacaatgtggtaaAACGTTTTCTCGTAGTAGTcaccttaaatctcaccagcgcattcacactggagagaagccatactggtgtgaacaatgtggtaaAACTTTTTCGAATAGTAGTcaccttaaatctcaccagcacatccacactggagagaagccgtacagctgtggtCAATGTGGGAAAACGTTTTCTGAGAGTAGTAGCCTTAAAACTCACCAGCGCATCCACACTGGAGaaaagccgtactggtgtgaacaatgtggtgCAGCTTTTTCTCATAGTAATAGCTTTAAAAGACACCAGCGCATCCACACTGGAGaaaagccgtacagctgtgatcaatgtgggaaaatgttttctgagAGTAGTGgccttaaatctcaccagcacatccacactggagagaagccgtactggtgtgaacaatgtggggcagctttttCTCAGAGTAGTCAACTTAAAAGACaccaccagcgcattcacactggagagaagccgtactggtgtgaacaatgtggggaaACATTTTCTCGTGGTGATACacttaaatctcaccagcgcattcacactggagagaagccgtactggtgtgaacaatgtggtaaAATGTTTTCTGAGAGTAGTaaccttaaatctcaccagcgcattcacacaggagagaagccgtactcgtgtgatcaatgtggtaaaatgttttctcagagtagtaaccttaaatctcaccagcgcattcacactggagagaagccgtactcgtgtgaacaatgtggaaaAATGTTTTCTCGGAGTAGTCACCTTAAAACTCATCAGCTCATTCACACTGCCTCGTAGTGAACATGTTTCAGAGCcgagctgtttcctcctgcctccttctcatgccctgatagctgagttgttatattctgatcttctctccacattgaaggctacggagccccggaggtgacatggaggggggaaaaaacagaaaaaaaaaacatgtactgggGACAAACCctaaactcgagatctcgactttcaaaCTCAAGATCTCGAGTTTGTGACATGGAGGGAAAAAGaacctgaagaaaaaaaaaattaataataatcaatATGGATACTCTGgacttttgtgctgcttatgGATGTT

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202237 lncRNA upstream 15805 36677288 ~ 36702681 (+) True G149535
TU202223 lncRNA upstream 29988 36644052 ~ 36688498 (+) False G149524
TU202219 lncRNA upstream 29988 36662231 ~ 36688498 (+) True G149524
TU202220 lncRNA upstream 29988 36676461 ~ 36688498 (+) False G149524
TU202221 lncRNA upstream 29988 36676461 ~ 36688498 (+) False G149524
TU202250 lncRNA downstream 16675 36737033 ~ 36795336 (+) True G149546
TU202247 lncRNA downstream 40589 36760947 ~ 36767272 (+) True G149544
TU202246 lncRNA downstream 45151 36765509 ~ 36767272 (+) False G149544
TU202283 lncRNA downstream 50878 36771236 ~ 36779958 (+) True G149556
TU202293 lncRNA downstream 126017 36846375 ~ 36847369 (+) True G149564
XM_039822416.1 mRNA upstream 60580 36651436 ~ 36657906 (+) True LOC120572900
XM_039822417.1 mRNA upstream 60580 36651436 ~ 36657906 (+) False LOC120572900
XM_039822418.1 mRNA upstream 60580 36652169 ~ 36657906 (+) False LOC120572900
XM_039822171.1 mRNA upstream 72292 36637497 ~ 36646194 (+) True LOC120572753
XM_039822261.1 mRNA upstream 242244 36464461 ~ 36476242 (+) False LOC120572806
XM_039823028.1 mRNA downstream 376554 37096912 ~ 37101599 (+) True LOC120573341
XM_039821963.1 mRNA downstream 381218 37101576 ~ 37121087 (+) True LOC120572645
XM_039823029.1 mRNA downstream 405839 37126197 ~ 37145176 (+) True LOC120573342
XM_039823026.1 mRNA downstream 489702 37210060 ~ 37236516 (+) True LOC120573338
XM_039821966.1 mRNA downstream 549932 37270290 ~ 37282392 (+) True LOC120572648
TU201846 other upstream 374908 36339648 ~ 36343578 (+) False LOC120572889
TU201847 other upstream 375008 36339648 ~ 36343478 (+) False LOC120572889
TU201730 other upstream 456114 36122706 ~ 36262372 (+) False G149187
TU201726 other upstream 466463 35788119 ~ 36252023 (+) True G149187
XR_005641500.1 other upstream 595768 36117298 ~ 36122718 (+) False LOC120572849
TU202320 other downstream 217048 36937406 ~ 36938142 (+) True G149584
TU202405 other downstream 630717 37351075 ~ 37351844 (+) True G149657
TU202419 other downstream 847555 37567913 ~ 37570708 (+) True G149671
TU202665 other downstream 956637 37676995 ~ 37681109 (+) True G149843
TU202667 other downstream 956637 37676995 ~ 37681109 (+) False G149843

Expression Profile