RNA id: XM_039822057.1


Basic Information

Item Value
RNA id XM_039822057.1
length 1988
RNA type mRNA
GC content 0.53
exon number 11
gene id mettl3
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18009164 ~ 18014135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTTTTTCGCCTTGGACCATACATGTTATCGCTCCCAACAAAGCTGACCGTGTTCAACTTTTGTCAAAGTACTGTTCAGTGTAACCGGTGTCGGTGTTGGTAACTTATTGCTGTTGATTCCAGTTCGTCATGTCGGACACGTGGAGCAACATTCAGGCGCACAAGAAGCAGCTGGACTCTCTGCGGGAGAGGCTGCAGCGGCGGCGGAAAGACCCAGCACAACAGTCCTCTGATGGCGGAAGCAGTACAGAGGGTTCCACAGCCAGGAGTGACAGCCCGGCTCCGTCAGCTCCGCTCCCCCCTCAAGAGGAGACAGAAAAACCACCAGACCCCGAACTAGAGAAGAGGCTGCTGGGGTATCTCTCTGATCTGAGTCTTTCAATGCCAACGGACTCCCTTGCCATCACAAGTGAACTCAGTTCTgagacagctgtcagtcatggatGCATCCAGAGTCTGCTGCTAAAATTCTCTGCTCAGGAACTCATCGAGGTCCGGCAGCCCACATCAGCCTCTTCTTCTACTACTTCCCCCTCAATCGTGGTAGCAGTGGACCATACAAAACTATGGGCCATGATCGGTTCTGTGGCTGGAGCCCAACGGGCTGGAGTCAAGAGAAAAGCAGAAGATCAAACCCACCACAAAAGAGCTCCAGGCTTCTCACCCTCACTTCAGAGCCCTGCttctcctccgctctcttcctTCACCTCTGTGACGCCGGCTTCCTCCTCACAGCTGGCAGGGCCTTCAGCATCGGGGAGCGGGGCTGATAAGAAGGGAAAGAGCAGTAAAAGCCAGTCGTCCCATTTGGACATGGAGATAGAGAGCCTCCTGAACCAACAGTCCACTAAAGAGCAGCAGAGCAAGAAGGTGAGCCGAGAGATTCTGGAGCTGCTTAATGCCAGCACAGCTAAGGAACAGTCCATCGTGGAAAAGTTCCGGTCTCGCGGCCGAGCTCAGGTCCAAGAGTTCTGCGACCACGGGACCAAAGAGGAGTGTGTGCGCTCTGGGGACACACCGCTGCCGTGCACCAAGTTACACTTCCGTCGCATCATTAACAAGCACACGGACGAGAGCCTCGGTGACTGCTCCTTCCTTAACACGTGTTTCCACATGGACACCTGCAAATACGTCCACTATGAGATCGACAGCCCTCCAGAGGCCGAGGGGGGCCTGCTGGGGCCCCAGGCCGGGACCACAGAGCTCGGCCTCTGTGCGGGGGACGCCGACAGCAACGTGGGCAAACTGTTCCCCTCACAGTGGATCTGCTGCGATATCCGCTACTTGGACGTGTCCATCCTCGGTAAGTTTGCGGTGGTGATGGCCGACCCTCCGTGGGACATCCACATGGAGCTACCCTATGGTACACTGACTGACGACGAGATGAGAAAACTCAACATCCCCATCCTGCAAGATGAtggcttcctcttcctctgggtCACCGGAAGGGCTATGGAGTTGGGCAGAGAGTGTCTCAGTCTTTGGGGCTATGATCGAGTTGATGAAATAATTTGGGTGAAAACAAACCAGCTTCAAAGAATCATCCGCACAGGAAGGACAGGCCATTGGCTGAACCACGGGAAGGAGCACTGTCTGGTGGGTGTAAAAGGAAACCCTCAGGGATTCAACAGAGGTTTGGACTGCGACGTCATTGTGGCCGAGGTCCGCTCCACCAGTCACAAACCAGATGAGATCTACGGTATGATAGAGAGACTCTCGCCCGGCACCAGGAAAATTGAGCTTTTCGGTCGACCCCACAACGTCCAGCCCAACTGGGTAACTCTTGGAAACCAGCTTGATGGCATTCATCTCTTGGATCCTGATGTCGTGGCTCGATTTAAGAATCGTTATCCGGATGGCGTCATCTCTAAACCCAAAAACATGCAGTGATGACAGTGGTCGCAGGTTTGGAAGAAGTTTATCAAtagactgtgtttttttttttatatccgtGAACAACTTTCTCTAATAAATGTTGTCAACAAGA

Function

GO:

id name namespace
GO:0080009 mRNA methylation biological_process
GO:0005634 nucleus cellular_component
GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
K05925 METTL3; mRNA m6A methyltransferase catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641476.1 lncRNA downstream 6693 17992145 ~ 18002471 (-) True LOC120572704
TU194329 lncRNA downstream 119512 17887278 ~ 17889652 (-) True G144013
TU194197 lncRNA downstream 155350 17852399 ~ 17853814 (-) False smim20
TU194173 lncRNA downstream 245459 17762380 ~ 17763705 (-) True G143898
XR_005641724.1 lncRNA downstream 324303 17682075 ~ 17684861 (-) True LOC120573415
TU194367 lncRNA upstream 2346 18016249 ~ 18019306 (-) True G144037
TU194570 lncRNA upstream 155390 18169293 ~ 18173021 (-) False mrpl52
XR_005641738.1 lncRNA upstream 234540 18248443 ~ 18250057 (-) True LOC120573605
TU194639 lncRNA upstream 522244 18536147 ~ 18539581 (-) False c14h4orf48
TU194691 lncRNA upstream 686306 18700209 ~ 18700555 (-) True G144275
XM_039821552.1 mRNA downstream 25247 17981216 ~ 17983917 (-) True LOC120572297
XM_039821554.1 mRNA downstream 27989 17978719 ~ 17981175 (-) True zgc:103586
XM_039821553.1 mRNA downstream 28112 17978719 ~ 17981052 (-) False zgc:103586
XM_039823582.1 mRNA downstream 30576 17975953 ~ 17978588 (-) True fis1
XM_039821438.1 mRNA downstream 37808 17966778 ~ 17971356 (-) True cldn15a
XM_039822060.1 mRNA upstream 5713 18019616 ~ 18022920 (-) True LOC120572700
XM_039823006.1 mRNA upstream 30007 18043910 ~ 18052078 (-) False oxa1l
XM_039823005.1 mRNA upstream 30007 18043910 ~ 18052078 (-) True oxa1l
XM_039821294.1 mRNA upstream 40675 18054578 ~ 18059496 (-) False LOC120572147
XM_039821293.1 mRNA upstream 40675 18054578 ~ 18059496 (-) True LOC120572147
XR_005641649.1 other downstream 188087 17766500 ~ 17821077 (-) False rbpjb
TU194183 other downstream 256175 17744954 ~ 17752989 (-) False tbc1d19
TU194121 other downstream 759610 17247951 ~ 17249554 (-) False LOC120572513
TU194122 other downstream 759610 17248088 ~ 17249554 (-) False LOC120572513
XR_005641408.1 other downstream 1965845 16019657 ~ 16043319 (-) True acap1
TU194343 other upstream 46289 18060192 ~ 18061155 (-) False LOC120573700
TU194399 other upstream 99949 18113852 ~ 18123690 (-) True G144058
TU194667 other upstream 581199 18595102 ~ 18597231 (-) True G144258
unassigned_transcript_702 other upstream 680796 18694699 ~ 18694772 (-) True trnan-guu_11
unassigned_transcript_703 other upstream 682193 18696096 ~ 18696169 (-) True trnan-guu_12

Expression Profile