RNA id: XM_039822100.1


Basic Information

Item Value
RNA id XM_039822100.1
length 5104
RNA type mRNA
GC content 0.50
exon number 7
gene id si:dkey-28a3.2
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4497448 ~ 4511964 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATCCTGGTACTTTTCAGCGTTGTCAAGGCAGCCTCAGAGCACGGCTGGCTGGCGGAAAGTAGCTGCAGTGTCCTGGCAACATATCTGTCCAAAAACGTTCACAAAAACTGTCCCGGAAAGTTAGGTGTAACTAAAAGGTATCGGGACACCTGCATACCGATGTGATGTCTAAGAGATTTGGCAGCTGCTCAGCAGAGCAAAGCACCTACTGCTGCATCATATAGGTAGACGCCATGGGTGTTAATGGCAGTGAGGATTCTGGACTCAGGGGATGAACTGAATAAGCGCGACAAGGAAGAGCCAACCAGTTGGATGAGAACTGATGGGCTGTCCGAGCTGGCGATGCCAACTACAAAAGATAAAAGTGGTTCAACGTCTCACCGCTACCGGCCCGCGTCAGAATATGATGACGCCACCCTCACCCAAAAGAGAAAATACTGGAGAATTAAGAAACGAGAGCAGAGGGCCCGACTGACAGAGCGCAGAGGAACGTCAACACAACACAGTCAAGAGGAAAAGCTCCGACATCTACATGCCCCTGCAGTGGTTAATTCCACTTTATCCGGCTCTTTTGCTGCTTTCACTTCTCCTTTGCAGAGTAATAATGACTCATACAAAACAGTCAATGTCTCTCCTGCATCACAGAGTGGAAATGCAGTGGGGGGTAGGTCAGTTGAAGCCACTGAAAACCAAAAGGAGAAGTGGCTCCGTACAATGAAACTCAACAAGGTCTTGCCTCAGTTGCCAGCATCATGTTCTGTCTCAGCCAAAGCTTCGAGGggcaacacagacacagtgaAATGCCTAACCGCAAGGGGTGCTGTGAGCAGAGGCGTTACCTCACTCACACCCATTGGGACCCAGCTGAACACCCATTCCTCAGTGCCTCCAGTCAGGATGACCAGTACTACTAACGGCAGCTCCGCTAAAACAACACCTCAGCCATGTGTGTCTATGCAGGGTTCATCAGTCCCCAAAACGCAACATAAGGCACAAGTTGCATTACCCATTCAGCCCAAACTCTTACCCACCAACGTGACCACAGGTATGATTCATGTGTCTTCTCCATGTGTCCCAGTTTCTATTAAAACAGAGGGGAAAACAGCGAACACAACACCTCAAAGTGGAACAAAGAGTGCCTTGGTCACCCTGCAGAGGGCTAAAGATGTTAGTAACTCACAGTCTTCCCCGGAGTCAGAGGAGCAGAGAGCAGCCAAGCGCAGAGAGCAATGGCGGATCAAAAAGCGAGAGCAGAGGGCAAAGCGGCGATGTGCGGCGATGAATTTACAGAGGCAAACTGCACAAAAACCAGGACTTGCGGGCGGCACAGTTGTTCAGCATCTTCCATCTCAGTCATTCTTGAGAGGAGCAGGCCAGAAGCAGTGTCCTCCTCGTGTCAGAACTTCATTTACATTGGCAAAAAGGGGAAATTATGACCTGCAAAGTGGGGCAGCAAGTTTGACTACAGTTAACCTGCAAGCAGGTCAGATAAAAGTACAAACTCCACATAGGACACCGCAGACATGTGGTGCTATTTCAGTGAGAAAGCTAGGGGAGTCACAGAGAAAGCTTCCAAGTTATGTACATCTTTCCAATGTTTCCCGAGGGATCGCACGGTGTAAAACCCCTAGACAGAGGTTCATCGAAGCCCAGAAGAATTTCCTAAATCAAAGAAACATAAGATGCAGATCCCCGTTGCTTACTTCAGTCTTTGGTACCAGAAATATCCCCCAAATTGACCCTAACGACACACCAGAGCAAATAATAGCCAAACGGCGAGAGAACTGGCGGGTTAAAAAGCGCGAACAGCGAGCTAAGCTGTCAATGGAAGTGAAGGCTCGGTTGAAGGAGAGGGACTCTCTGATGCGAAGAGTGAAACGTTACCAGAGAATCCTAGAGGAGATGAGGAGGGCCAGAGCACTGGCCCAATCAGCAGGAAGCACCCACACCCACGCCCACGCCTCTGAGACCATTGGAGGGTTCATCAAAGAAGACGGGACAGTGACCATTAACATTCCCCAGGTTCCTACAGATCACAACACAGCAGCGCACAAAAGTGAAGAAGCTTGTCATGCAGTTTCTAATAATACCCCCATTACAAAACCTCAGCATCAACCCGATACTAAACGGAGAGGTAGTACACCCATTCATGTAACCCAGCCTCCCCCTTTCCTACGCCCCGCTCAGTTGAAAGTCTCTTTTCCTTTTGCTGGACAGTCGGTCACCAAGCCTCCAAGACTGCTGTCAATCAGACCAAGGACTCAAGTTGAAAGCACAACTGTTCCTAATTTACACAAGTTAGCGATCCAAACTGGTAGTCAGCTCACTCTCACTCATCCTCAAACCCCTCAAAATGCCGTTTCTGGAGGATCGACAGCGGGGTCGAATCTCGGTGGCTGTGTCATGAAAATGTCCATCTCAAGTAGTGCGCCATCCCTGTCGGCACTCTCTCTGGATCCAGAGTTGAcggaggaggagaggatggcAAAAAAGAGGGAGTACTGGAGGATAAAGAAACGAGAGCAGCGAGCAGCTCGTGCTGCTCGATTGAGGCAGGGTGTCTTACTAGCGAGGGCCAATGCGACTCTACAGAGGAGGAAAGCCCAGAAGCAAATAGCAGTAACCACTGTACCACCAGGAAGAAGTCTTACTAACCATTCAGGAAATGCACAATTTCTCCCCATAAACAGTGTGCCGCTTACACCACATGCAAATGAGATAAAACAAGAGAGTGAGTCTGTGCCAGCAGTTGACCTAAATTCTCAACCAGAACAAGCCATCTGTCCAGATATCAAACCCCCAACCTCCCCATCACCACCTCCTGCATCTCAGCCAGAGCCTGACCTAGCTCTGAATGCAGACAGCCAAGCTACCACTCTGCTAGCCGTTGCCTCTATGAAGAAACTCCTGGAAGAATCACTTAGCACAGTGACCGAGTGTAGAAGTGTGCAGACTGGCATTAAAACAGAGTCAACGGAAGACTCCTCAGAGCAAGAGATAAAGCCAGATTTACCTCTGAATGAGGTGGCTCCCATTGCTGCCGACTTGAAATTGGAGATAGAAAGCTGCCAGCCAGATACTGATGGCTTGTTACGAGCAGGTCCACCAAGCCCTCATCTGAAGGAATCCTCCCAAAGTAGCGAGACACTTCCACCTCTTTCCACCTCCAACGAGGCAGTCCTGCATCCCACTTGTGAGCACTCATCCCAAACCCTTTCGAAATTCATAGTAAACCCCTCCATGGAAGCCTCTGACAGCCCATCTTCACCACGCAGAACCCAGAGGCTTCGCACCAAAAAAGCAGGCCATCAAAGCTGCTGTTCCCCAGAGCCGCCAAAGCTACATCACCTACCCATGGATCAATTACAACCACAGAGACAACAGTGTCCGGCACAAGAACAATGCCAAAACAGCAACTCAGTCAACAACAGTGTGGTGACCAAGCACAGCGGTGGGATCAGCctgcagaggaagagagagtaCTGGAAGCTGATGAAGAGGCAGCAAAGGGCCAGGTTAAGGGCCaggcagaaagaaagacagggaGAATGCAGCAATCGGCTTTCCTACAGAAACATTCAGGCTCCAGGTCTCGTTGTTATCAACACTGTtaagggtgtaaatcctccagcAAAGCCAGCCCTCCAGCCCAGGCCATCCATTGCTTCTCTGACCACAGTGACCAGCATCCCCAATGTCCTGGTCGTCAGCCCTACAACATGTAATGCTGAACAGTCACCTGACACACTCCAGGTCAAATTGCCCGTCACCAGTGTCTCCTGTTCACCCAGAAGTGAGCAGAACCACATGAACGTCGGGCTTTCGCAGATCGTGTCCAACTATCACGGAGCTCACGGTAATCAGCAGCAGGCCCTGCCAGGTTCACGAAAGTGGATGTCTAGAGGCACAGGTGTAGGCTCAGCCCCCTCCCTCCCTACTCTGAAGCCCCCAGACAACCCACTGTCCAAAATCAATCTGCAACCCATTGATCCCTCTCAAACTCCCAGTTCCCCCCTCAGTCCAATCAAAACCCCTTGTGCTCAACTTCCGAGCTGCACGCAGATGATCCAACCTCCCACCAAGCTGGCACCTGTAACCACCATGGTTCCACCAAAGCCCATCCCAGGAGAGTCTGAGGAGGACTTTTTGAGGAGGAAGCGGGAGTACTGGAGGATAAAAAAGAAGGAGCAGAGAGCCAGGAAGGCCATTCGGGACAAGGGATTCACCCCACTGAGAGCTGCCCATAACTTGAGGCCCATCCTGCCTGCTCAGGACCTGCAAACACAGGAGTCTGGTCCGTGGGTGAGCTCCATTGAGGAGTCAGAACATCTAATGAGCACTTCAGAGGACACTGACCCGGGATCCTACCCATTCACAACTTACACAGCACCAGCAGAAGATGAGCTTCTGTTCGCCGACTACGAGAATAATACCGGCGAGGATGGTCCTGGCGAGGATGGTCCCGTCTCAGACGCCGTGTGGAGGAACCGCTACCTCATGGACTACGATCCGCTCAACCAGCTGCTGGTGTGCATGGTGTGTGGGGAGCTGCAGTACTCCCACAGCCTGGAGGGAGTCAGGGCCCACATCGACGAGGCTCACCCGGACACCCTGAGCCTGGAGCCCAGGGAGCAGCGGCAAATACTGGAGGCCTGGGACGAGCAGGTGTCCCAGCGAGAACGCTTCTTCACCAGCCAGCTCCGGCAGCACAGCGGGGGCCTGGCAGAAGCACACATGAactgaagagcagaggagaggaccGAAGAGAACGGAGCAGGAGAGAAAACCCACACtttgtcttatttatttattgtaattttatcaGTTTGTTTACCTTCACCTTGAAAGAGAATGTTGTATATGGAGCATTCACCCCAAAAAGCAGCTTTACCTCATTTCCTACCAGGGTTGTAATGTGGGTTTATAAAAGCTAgtatggattttctttttttacattgacaCTATGACAACTGAGACTTTGTAATACTTTCTGAAATATTTAAAGGAGATCTTCAACATTCTGGGAAATGCAGTCTTTGTACTAAGCTAGGCTAAAAGCATCCTGGACCTATCTCTgtaataaacacacatataaaactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190283 lncRNA upstream 6675 4492677 ~ 4493034 (+) True G141084
TU190280 lncRNA upstream 9108 4489993 ~ 4490601 (+) True G141082
TU190278 lncRNA upstream 11182 4488281 ~ 4488527 (+) True G141080
TU190277 lncRNA upstream 11715 4487740 ~ 4487994 (+) True G141079
TU190237 lncRNA upstream 131372 4366561 ~ 4368337 (+) True G141052
TU190295 lncRNA downstream 129741 4641705 ~ 4664198 (+) True G141093
TU190410 lncRNA downstream 266777 4778741 ~ 4826417 (+) True G141169
TU190420 lncRNA downstream 327443 4839407 ~ 4839638 (+) True G141178
TU190407 lncRNA downstream 340508 4852472 ~ 4855735 (+) True G141166
TU190421 lncRNA downstream 343839 4855803 ~ 4857185 (+) True G141179
XM_039821435.1 mRNA upstream 20422 4447409 ~ 4479287 (+) True rtn3
XM_039821432.1 mRNA upstream 20422 4447409 ~ 4479287 (+) False rtn3
XM_039821433.1 mRNA upstream 20422 4447415 ~ 4479287 (+) False rtn3
XM_039823283.1 mRNA upstream 184164 4313151 ~ 4315545 (+) False zgc:112271
XM_039823545.1 mRNA downstream 16734 4528698 ~ 4594420 (+) True eml3
XM_039823546.1 mRNA downstream 16737 4528701 ~ 4594420 (+) False eml3
XM_039823550.1 mRNA downstream 85068 4597032 ~ 4641652 (+) False mta2
XM_039823552.1 mRNA downstream 85068 4597032 ~ 4641627 (+) True mta2
XM_039823551.1 mRNA downstream 85069 4597033 ~ 4641652 (+) False mta2
TU190258 other upstream 12102 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 54762 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 184171 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 184171 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 1195078 3256551 ~ 3304631 (+) False mllt3
unassigned_transcript_682 other downstream 1516676 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1725039 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 2076987 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 3204650 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 3206056 7718020 ~ 7721637 (+) False LOC120573538

Expression Profile