RNA id: XM_039822102.1


Basic Information

Item Value
RNA id XM_039822102.1
length 2756
RNA type mRNA
GC content 0.59
exon number 5
gene id si:dkey-106g10.7
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4486570 ~ 4498207 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGTGGGTGTGCATTGTCGACGCTGCTACTGTCTCTTTAAATTTACCCAGGAGCCCCTTAAGGAGCCCCAGGGGCCCCTAGTCCGGCTCCCCACCCTGAAGACAAGCAAGAGCCTTAAAATACATTACTAGAGGCCTGCGCCGAGGCGCTCCCACACAGCGCAGGACGGAGGAACGGGCTCTATTCGACCAGCGGAATACATGATTGTGTGATTATATGAAAAGTTAACTTGGCTCCCGTGCGGGGCGCGTGGGGGGGGGACATCGTAGAGCACGGGCTCCTCAGCGATGGGCTCGTTATAGAGCGCCTGCCAGATGCGTGTCGAACGGCGCCGAGCGGCGTGAACATGTCACTGTTGTAACACGGTGTTGTCAGTGTGACATGTCCCGCTTCAGCGCTACGGTACGGTGAAGGAAGGAGGAACACTAGCCACTATTAAAACAGCGGGCAGGCCAGTGATGGAAGAGAAAGAATCGGGGGAAAGCGAGCCCGTGGACCTCCGGTGTGCCGAGCAGCCTGAGCTGCTCTCATTAATAATAAGCGGAGAGGAGGAAGCGACGCAAGAGGAGAGTGACTTGggagAAGAGGACGGTCTTGCCAATGGCCACGGTGAGGAGGAATCAGAGGCTGGCATGGTCACACCTGTCCGGTCTCCATGCACCAGCTACTGGAACATCACAGAGGGGCCGGACCACCCACTGCTCTCCCCGGCCCCTGGGCCCTCTGGACGTAAACCCAGGGTCCAGAGGGCCTCGCGTCCAGGCCTGAGCCGGATCCCAGGGCGCGACCACCGCCGCTACTACCACGAGTACTGGCGCAGCGAGTACCTGATGGACTTTGACCCCCAGCGGCACGGCATGATCTGCATGGTGTGCGGCAGCTCGCTGGCCACCCTGAAGCTCAGCACCATCAAGAGGCACATCCGACAGAAGCACCCAGACTCCTTGCTGTGGAGCGCTGCTGACAAGGAGGTGATCCGCTCGGGGTGGGAGAGCCACCTGAGCCTGGGGGGGGGTCAGAGGCCGTACAGCTCGGCTGCTGGACCTTCACCTCAGGAAGAAGAGGAGCAGCTAGACTCAGACCAGCATGCTGCCGCAGAACTCCCGGAGCCTTTGACACCCCAGGAGCAGCCCCAACAACCTCCCAGTCTGTCTCCCCGCTCTGAGGAGGGTGAAGCCCCCCAGCCCAAACAGGAGGAGCAGGACGTCCCGGGTCCCTCAGCCCGGACCTTGGAACGCTACCTGAACGACTCGCTGCACGCCTGGTTCCGCCAGGAGTTCCTGATGGAGTACGAGGCGGAGGCCGGCCGGCTGCTGTGCATGGTGTGCGGAGGAGAACTGCCCTCGCTGCACCTGGACCACATCAAGAGCCACGTGCTGGACACCCACCCCAACTCGTTGGTCTACAGCTCCGAGGAGAAGCACTGCATCCTGCAGGCCTGGGCTCAGACTCACGAAGAGTTAGAAAACTCAATCAAATCAGAGCCCAACACCAAAGAAGGCGGGGCGGACCTCTTTGCTCAGGAAGTGGAGGCCATCCAGATCAACAGTGACTTGTACCCGGAGGGTGACGGCACTTTAACTCAGGACCCTTGTCTCATCGCTGAGGATGGAGGTGTCGGAGCGGCGCAGCAGGGACCTCCGCCCCTCCGCCAGCCCAGGAAGAGGCGGCTGCGCGGGGGCGACCCGTGGCGGCTCCGCCTCGACTACCTGGTGGCCTACGGGCCTCAGGGCCAGGGCACGTACTGCATGGTGTGTTCTCAGGTCCTGCACCAAATCAAAGTCAGCAGCTTCCGCCGCCACATCCAGGAATGTCACCCCGAGACCACCACCCTGAGCCGGCAAGAGCGGGAAGCCATGGCCGCCGCCTGGACCAAAGATTATTCTAGTGAAGGCACGCACATTCAAGATGCAGAAATCAACCCGAGCGAAGCCGATGTCCTGAATACCACAGGAGAGAGCAACGAGGACACCTCCCCTGATGTCAGAACACACAGCAAAATGGTGAAGAAGGAGGAGCGTGTGAGCGGAGGGAAGGGCAGAGCGAGGGACGACGGCGCTGCGGCCACGCCGTCTCGACACAGCCATTACCCTGGGAAGGACCAGCGGAGGAACTACCAGGCGCGCTGGCGGATGGAGTACCTGATGGATTACGACTGCCGCAGACACGGGCTCATCTGCATGGTGTGCGGAGCCACTCTGGCCACGCTGAAGGTCAGCACCATCAAGAGGCACATCCAGCAGGTGCACCCCCACTCTCTGGACTACGGCCCCGAGGAGAAGCAGCAGGCCCTGCTGAGCTACAACCAGGCCGCCATGCACTTCGTCCACTCTGACGACTGCTTCTCGGCCCAGGACCACGGACACACCGAACTGGCTCCCACTCCAGCACACTTTGGCACGTAGAAAGGGCTTCCGTCCGATGCTCCTCACGCGGCCCCTGTTCAGAAACAGCCTTCCTACCTTCTTTCTTAAAGAGAAATTCAAGTATTAGTCCAACAGGGCCTTATTCTCGGCCCTCTGACTTTGTTCAAAATTTCCCAAATCTCTACATTGCAGGTGCAGAGTGAAATGGTATCCTGAAAAGTCTGAGAATAAGACCCAGGCTGACAAATACTGgaatttccccttttttttttatttgaatctgAGAGTGTGCTATGGTTAAAGTGGCGGGTAGCAACTGCCACAGAGGAAATGTCACAACCTGAATATGTTACCACCTACAAATGTcatggcctaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190330 lncRNA downstream 104 4485903 ~ 4486466 (-) True G141115
TU190329 lncRNA downstream 1788 4483738 ~ 4484782 (-) True G141114
TU190317 lncRNA downstream 4524 4478430 ~ 4482046 (-) True G141109
TU190321 lncRNA downstream 4524 4478430 ~ 4482046 (-) False G141109
TU190303 lncRNA downstream 154551 4331154 ~ 4332019 (-) False LOC120573533
TU190340 lncRNA upstream 15800 4514007 ~ 4526194 (-) True G141123
TU190376 lncRNA upstream 155957 4654164 ~ 4656332 (-) True G141155
TU190441 lncRNA upstream 229891 4728098 ~ 4730999 (-) True G141193
TU190453 lncRNA upstream 272765 4770972 ~ 4772477 (-) True G141202
TU190429 lncRNA upstream 275421 4773628 ~ 4829146 (-) False peli3
XM_039821430.1 mRNA downstream 39220 4436370 ~ 4447350 (-) False men1
XM_039821429.1 mRNA downstream 39243 4436370 ~ 4447327 (-) False men1
XM_039821431.1 mRNA downstream 41668 4435605 ~ 4444902 (-) True men1
XM_039823073.1 mRNA downstream 52687 4381783 ~ 4433883 (-) False map4k2
XM_039823547.1 mRNA upstream 20169 4518376 ~ 4528012 (-) True ecsit
XM_039823549.1 mRNA upstream 20169 4518376 ~ 4528004 (-) False ecsit
XM_039823548.1 mRNA upstream 20169 4518376 ~ 4527994 (-) False ecsit
XM_039821487.1 mRNA upstream 295271 4793478 ~ 4829162 (-) False peli3
XM_039821486.1 mRNA upstream 295271 4793478 ~ 4829162 (-) False peli3
TU190189 other downstream 211296 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 211296 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 211296 4274651 ~ 4275274 (-) False G141027
TU190197 other downstream 211296 4274651 ~ 4275274 (-) False G141027
TU190151 other downstream 331023 4154924 ~ 4155547 (-) True G141003
TU190366 other upstream 143288 4641495 ~ 4664198 (-) True G141145
TU190380 other upstream 162414 4660621 ~ 4661111 (-) True G141159
TU190477 other upstream 460472 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 601498 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 1098751 5596958 ~ 5600462 (-) True G141400

Expression Profile